[DATALAD RUNCMD] Compute SWU_4/sub-0025721/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025721/ses-1/anat/sub-0025721_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025721/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025721/ses-1/label/catROI_sub-0025721_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/k1/MD5E-s61229--8b7010167ea6aeddd53113b4236f6d69.mat/MD5E-s61229--8b7010167ea6aeddd53113b4236f6d69.mat

SWU_4/sub-0025721/ses-1/label/catROI_sub-0025721_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/7W/MD5E-s188943--cfa90ddaa01dfcae5d77b3c4ec126cfa.xml/MD5E-s188943--cfa90ddaa01dfcae5d77b3c4ec126cfa.xml

SWU_4/sub-0025721/ses-1/label/catROIs_sub-0025721_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/82/MD5E-s120078--cf47fba41413f80e064cf100bfcc1ed0.mat/MD5E-s120078--cf47fba41413f80e064cf100bfcc1ed0.mat

SWU_4/sub-0025721/ses-1/label/catROIs_sub-0025721_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/2m/MD5E-s332117--af85255cbbdcd94bb246e71c842b00f8.xml/MD5E-s332117--af85255cbbdcd94bb246e71c842b00f8.xml

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/2f/MD5E-s158779--f8608a351eeda5cc2e026662d47a2d33.nii.gz/MD5E-s158779--f8608a351eeda5cc2e026662d47a2d33.nii.gz

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/xQ/MD5E-s177146--b645871e5ec8c0cec1e0b75438abbd72.nii.gz/MD5E-s177146--b645871e5ec8c0cec1e0b75438abbd72.nii.gz

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/vZ/MD5E-s240456--dbd47cf3db22d80d394a3faf17bece15.nii.gz/MD5E-s240456--dbd47cf3db22d80d394a3faf17bece15.nii.gz

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025721/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/7v/MD5E-s267446--2dc914651b094f1e867b6993f215ec8b.nii.gz/MD5E-s267446--2dc914651b094f1e867b6993f215ec8b.nii.gz

SWU_4/sub-0025721/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025721/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/37/MD5E-s24086--ba33b32a7bd2cdf8fad7bea9eed4e7f8.nii.gz/MD5E-s24086--ba33b32a7bd2cdf8fad7bea9eed4e7f8.nii.gz

SWU_4/sub-0025721/ses-1/mri/aal3_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025721/ses-1/mri/aal3_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/1p/MD5E-s181584--2b301aa9fa156a03ee60141d2594c6f6.nii.gz/MD5E-s181584--2b301aa9fa156a03ee60141d2594c6f6.nii.gz

SWU_4/sub-0025721/ses-1/mri/anatomy3_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025721/ses-1/mri/anatomy3_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/VX/MD5E-s130714--16c986102ca989157e152ca4efcfbe40.nii.gz/MD5E-s130714--16c986102ca989157e152ca4efcfbe40.nii.gz

SWU_4/sub-0025721/ses-1/mri/anon_misub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/zP/MD5E-s9079814--fe3f6c8e396a3498edb5f856889dd0f9.nii.gz/MD5E-s9079814--fe3f6c8e396a3498edb5f856889dd0f9.nii.gz

SWU_4/sub-0025721/ses-1/mri/anon_msub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/J7/MD5E-s8954931--b773381f56789cb8a7d7a82b0ff627e8.nii.gz/MD5E-s8954931--b773381f56789cb8a7d7a82b0ff627e8.nii.gz

SWU_4/sub-0025721/ses-1/mri/cat_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/jk/MD5E-s95431--07d7bb3b2efcff5725f3e02fa2cbfec8.nii.gz/MD5E-s95431--07d7bb3b2efcff5725f3e02fa2cbfec8.nii.gz

SWU_4/sub-0025721/ses-1/mri/cobra_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025721/ses-1/mri/cobra_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/FV/MD5E-s48857--71dfda8f96e40b26b2bf79c7e371067f.nii.gz/MD5E-s48857--71dfda8f96e40b26b2bf79c7e371067f.nii.gz

SWU_4/sub-0025721/ses-1/mri/hammers_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025721/ses-1/mri/hammers_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/Xz/MD5E-s142652--7aa547913a1df19c4763976978226c4f.nii.gz/MD5E-s142652--7aa547913a1df19c4763976978226c4f.nii.gz

SWU_4/sub-0025721/ses-1/mri/ibsr_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025721/ses-1/mri/ibsr_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/Gx/MD5E-s151056--d7692790fddd324678f603cae4210e5d.nii.gz/MD5E-s151056--d7692790fddd324678f603cae4210e5d.nii.gz

SWU_4/sub-0025721/ses-1/mri/it_sub-0025721_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F9/zm/MD5E-s283--27690d740415d551317ba23e25ab6713.mat/MD5E-s283--27690d740415d551317ba23e25ab6713.mat

SWU_4/sub-0025721/ses-1/mri/it_sub-0025721_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/zK/MD5E-s283--9965ed2eadd35be6de966d1a601fccdf.mat/MD5E-s283--9965ed2eadd35be6de966d1a601fccdf.mat

SWU_4/sub-0025721/ses-1/mri/iy_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/qz/MD5E-s43974661--6a73bbf236949195a91b0036ea2a6516.nii.gz/MD5E-s43974661--6a73bbf236949195a91b0036ea2a6516.nii.gz

SWU_4/sub-0025721/ses-1/mri/julichbrain_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025721/ses-1/mri/julichbrain_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/k0/MD5E-s190439--a8285263143bada0592773b6d7b6f7a7.nii.gz/MD5E-s190439--a8285263143bada0592773b6d7b6f7a7.nii.gz

SWU_4/sub-0025721/ses-1/mri/lpba40_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025721/ses-1/mri/lpba40_sub-0025721_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025721/ses-1/mri/m0wp1sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/mZ/MD5E-s2578996--89826af71e0082446414c3383761db0b.nii.gz/MD5E-s2578996--89826af71e0082446414c3383761db0b.nii.gz

SWU_4/sub-0025721/ses-1/mri/m0wp2sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/J9/MD5E-s2296486--7de8c2bb597117a54ca3180aa6f841d3.nii.gz/MD5E-s2296486--7de8c2bb597117a54ca3180aa6f841d3.nii.gz

SWU_4/sub-0025721/ses-1/mri/m0wp3sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/XK/MD5E-s2526870--40534727b8eee66c662e1b74762480fa.nii.gz/MD5E-s2526870--40534727b8eee66c662e1b74762480fa.nii.gz

SWU_4/sub-0025721/ses-1/mri/mori_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025721/ses-1/mri/mori_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/4F/MD5E-s167737--0875046030066c080c16fb6a01d2c8ea.nii.gz/MD5E-s167737--0875046030066c080c16fb6a01d2c8ea.nii.gz

SWU_4/sub-0025721/ses-1/mri/mwp1sub-0025721_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Gm/Fw/MD5E-s2586379--2ac233a2c80a066e9ded97ef8e75c84f.nii.gz/MD5E-s2586379--2ac233a2c80a066e9ded97ef8e75c84f.nii.gz

SWU_4/sub-0025721/ses-1/mri/mwp2sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/FX/MD5E-s2299840--a6bc3040b4d9d0b2dfbf509dfe18b699.nii.gz/MD5E-s2299840--a6bc3040b4d9d0b2dfbf509dfe18b699.nii.gz

SWU_4/sub-0025721/ses-1/mri/mwp3sub-0025721_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025721/ses-1/mri/neuromorphometrics_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025721/ses-1/mri/neuromorphometrics_sub-0025721_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025721/ses-1/mri/p0sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K7/fp/MD5E-s620877--96645113deafe403cace9a7662964f91.nii.gz/MD5E-s620877--96645113deafe403cace9a7662964f91.nii.gz

SWU_4/sub-0025721/ses-1/mri/p1sub-0025721_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025721/ses-1/mri/p2sub-0025721_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025721/ses-1/mri/p3sub-0025721_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025721/ses-1/mri/rp1sub-0025721_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025721/ses-1/mri/rp2sub-0025721_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025721/ses-1/mri/rp3sub-0025721_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025721/ses-1/mri/t_sub-0025721_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025721/ses-1/mri/t_sub-0025721_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025721/ses-1/mri/thalamus_sub-0025721_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025721/ses-1/mri/thalamus_sub-0025721_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025721/ses-1/mri/wj_sub-0025721_ses-1_run-1_T1w.nii.gz

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