[DATALAD RUNCMD] Compute BNU_2/sub-0025933/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025933/ses-1/anat/sub-0025933_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025933/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025933/ses-1/label/catROI_sub-0025933_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/5P/MD5E-s57873--ecbc5a74f63b0523b8e95816ccc52467.mat/MD5E-s57873--ecbc5a74f63b0523b8e95816ccc52467.mat

BNU_2/sub-0025933/ses-1/label/catROI_sub-0025933_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9f/pg/MD5E-s188771--a3be51324aad4d15aa2be4192c6a8923.xml/MD5E-s188771--a3be51324aad4d15aa2be4192c6a8923.xml

BNU_2/sub-0025933/ses-1/label/catROIs_sub-0025933_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/3W/MD5E-s120149--0f850bed589db5e38e0592f58e422233.mat/MD5E-s120149--0f850bed589db5e38e0592f58e422233.mat

BNU_2/sub-0025933/ses-1/label/catROIs_sub-0025933_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z8/3V/MD5E-s332063--23e1f82413a0a00f2383701a85d6ba82.xml/MD5E-s332063--23e1f82413a0a00f2383701a85d6ba82.xml

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zq/00/MD5E-s145886--594f4e4ea0acb4191c1d12e95b22b086.nii.gz/MD5E-s145886--594f4e4ea0acb4191c1d12e95b22b086.nii.gz

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/79/MD5E-s162078--bc1a9a3398446dc41bba70c70654067b.nii.gz/MD5E-s162078--bc1a9a3398446dc41bba70c70654067b.nii.gz

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/v8/MD5E-s216887--fe55658f58b2a8fcf7624da8e9118960.nii.gz/MD5E-s216887--fe55658f58b2a8fcf7624da8e9118960.nii.gz

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025933/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XZ/vG/MD5E-s239746--9c7f30d90b93b147c9e9a8b6960adb52.nii.gz/MD5E-s239746--9c7f30d90b93b147c9e9a8b6960adb52.nii.gz

BNU_2/sub-0025933/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025933/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/jF/MD5E-s19333--b9c47c39aade39e1d0af4d62b0c0e929.nii.gz/MD5E-s19333--b9c47c39aade39e1d0af4d62b0c0e929.nii.gz

BNU_2/sub-0025933/ses-1/mri/aal3_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025933/ses-1/mri/aal3_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/wm/MD5E-s163546--d187134a3d8b23a95b3318ebc2f34e1f.nii.gz/MD5E-s163546--d187134a3d8b23a95b3318ebc2f34e1f.nii.gz

BNU_2/sub-0025933/ses-1/mri/anatomy3_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025933/ses-1/mri/anatomy3_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/m7/MD5E-s116099--533c773dc0ab3abc029dd4f85d3e0616.nii.gz/MD5E-s116099--533c773dc0ab3abc029dd4f85d3e0616.nii.gz

BNU_2/sub-0025933/ses-1/mri/anon_misub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/gG/MD5E-s3846543--4c66db3c47ac915bb7b575a593152b40.nii.gz/MD5E-s3846543--4c66db3c47ac915bb7b575a593152b40.nii.gz

BNU_2/sub-0025933/ses-1/mri/anon_msub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/kk/MD5E-s9332353--e513ce3a07bef1c441fda6511115380b.nii.gz/MD5E-s9332353--e513ce3a07bef1c441fda6511115380b.nii.gz

BNU_2/sub-0025933/ses-1/mri/cat_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/QW/MD5E-s87192--fcb1c5d6a54fd3083f58188a1a114b92.nii.gz/MD5E-s87192--fcb1c5d6a54fd3083f58188a1a114b92.nii.gz

BNU_2/sub-0025933/ses-1/mri/cobra_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025933/ses-1/mri/cobra_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mm/KQ/MD5E-s39752--87272101bd08451d567a2e2235202ebf.nii.gz/MD5E-s39752--87272101bd08451d567a2e2235202ebf.nii.gz

BNU_2/sub-0025933/ses-1/mri/hammers_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025933/ses-1/mri/hammers_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/j5/MD5E-s128369--b3824a29f144d4c387f567cdabfc3b1d.nii.gz/MD5E-s128369--b3824a29f144d4c387f567cdabfc3b1d.nii.gz

BNU_2/sub-0025933/ses-1/mri/ibsr_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025933/ses-1/mri/ibsr_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/V9/MD5E-s134360--bcfb6fbedf073c8e294e132a94dd17f4.nii.gz/MD5E-s134360--bcfb6fbedf073c8e294e132a94dd17f4.nii.gz

BNU_2/sub-0025933/ses-1/mri/it_sub-0025933_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/gg/MD5E-s284--fa123e90f28c32051e64acea207eccc2.mat/MD5E-s284--fa123e90f28c32051e64acea207eccc2.mat

BNU_2/sub-0025933/ses-1/mri/it_sub-0025933_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vz/J4/MD5E-s282--4e5aa61a10102919372469ebedb672ed.mat/MD5E-s282--4e5aa61a10102919372469ebedb672ed.mat

BNU_2/sub-0025933/ses-1/mri/iy_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/82/MD5E-s34921187--433021ac226f9356e17154e642f4f406.nii.gz/MD5E-s34921187--433021ac226f9356e17154e642f4f406.nii.gz

BNU_2/sub-0025933/ses-1/mri/julichbrain_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025933/ses-1/mri/julichbrain_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Z/QP/MD5E-s172844--1431e242a707a23e5b7a5606d7fdcbf9.nii.gz/MD5E-s172844--1431e242a707a23e5b7a5606d7fdcbf9.nii.gz

BNU_2/sub-0025933/ses-1/mri/lpba40_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025933/ses-1/mri/lpba40_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/JJ/MD5E-s125528--2015ae2b360ff90e54a9ad83a5f5853d.nii.gz/MD5E-s125528--2015ae2b360ff90e54a9ad83a5f5853d.nii.gz

BNU_2/sub-0025933/ses-1/mri/m0wp1sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/ZF/MD5E-s2592346--064b5b248b99afb5015e619cd51fd399.nii.gz/MD5E-s2592346--064b5b248b99afb5015e619cd51fd399.nii.gz

BNU_2/sub-0025933/ses-1/mri/m0wp2sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/MX/MD5E-s2263299--f4b64dd7317e4eba99beab880783eaa5.nii.gz/MD5E-s2263299--f4b64dd7317e4eba99beab880783eaa5.nii.gz

BNU_2/sub-0025933/ses-1/mri/m0wp3sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/m0/MD5E-s2470555--93c98e1401bdd37318c6710d792b1908.nii.gz/MD5E-s2470555--93c98e1401bdd37318c6710d792b1908.nii.gz

BNU_2/sub-0025933/ses-1/mri/mori_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025933/ses-1/mri/mori_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/Mq/MD5E-s151792--c14561dab7fc02e4f489b5d1ca0266b3.nii.gz/MD5E-s151792--c14561dab7fc02e4f489b5d1ca0266b3.nii.gz

BNU_2/sub-0025933/ses-1/mri/mwp1sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/w0/MD5E-s2594627--246a8dfb514aac1bf9d23f54bd6af8f9.nii.gz/MD5E-s2594627--246a8dfb514aac1bf9d23f54bd6af8f9.nii.gz

BNU_2/sub-0025933/ses-1/mri/mwp2sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/q6/MD5E-s2257800--f7bcfd0f26576de2b2844226443df548.nii.gz/MD5E-s2257800--f7bcfd0f26576de2b2844226443df548.nii.gz

BNU_2/sub-0025933/ses-1/mri/mwp3sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-1/mri/neuromorphometrics_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025933/ses-1/mri/neuromorphometrics_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-1/mri/p0sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/5w/MD5E-s736106--8b8a89649ea88c81bfe88bbeb60dcf59.nii.gz/MD5E-s736106--8b8a89649ea88c81bfe88bbeb60dcf59.nii.gz

BNU_2/sub-0025933/ses-1/mri/p1sub-0025933_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025933/ses-1/mri/p2sub-0025933_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025933/ses-1/mri/p3sub-0025933_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025933/ses-1/mri/rp1sub-0025933_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025933/ses-1/mri/rp2sub-0025933_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025933/ses-1/mri/rp3sub-0025933_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025933/ses-1/mri/t_sub-0025933_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-1/mri/t_sub-0025933_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-1/mri/thalamus_sub-0025933_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-1/mri/thalamus_sub-0025933_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-1/mri/wj_sub-0025933_ses-1_run-1_T1w.nii.gz

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