[DATALAD RUNCMD] Compute SWU_4/sub-0025683/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025683/ses-1/anat/sub-0025683_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025683/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025683/ses-1/label/catROI_sub-0025683_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/17/MD5E-s58141--7c9b3e600d6396c1066048d9cc978b35.mat/MD5E-s58141--7c9b3e600d6396c1066048d9cc978b35.mat

SWU_4/sub-0025683/ses-1/label/catROI_sub-0025683_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/9k/MD5E-s188546--99e0b2450c8847b834f456407f0dc7b4.xml/MD5E-s188546--99e0b2450c8847b834f456407f0dc7b4.xml

SWU_4/sub-0025683/ses-1/label/catROIs_sub-0025683_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/59/MD5E-s120057--cb9384f0b104692c2861e647c1e0af6c.mat/MD5E-s120057--cb9384f0b104692c2861e647c1e0af6c.mat

SWU_4/sub-0025683/ses-1/label/catROIs_sub-0025683_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/Xk/MD5E-s332122--f0a2486d5a3249fe905010fe0b16badc.xml/MD5E-s332122--f0a2486d5a3249fe905010fe0b16badc.xml

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/z7/MD5E-s181035--9c4d92b98dc76bba01f559deb52ef63d.nii.gz/MD5E-s181035--9c4d92b98dc76bba01f559deb52ef63d.nii.gz

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/1W/MD5E-s202470--acf64c4904b4bd94653664bde265e0f2.nii.gz/MD5E-s202470--acf64c4904b4bd94653664bde265e0f2.nii.gz

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/FJ/MD5E-s272346--621fd1b89dddfda65d0b0126643f1b4a.nii.gz/MD5E-s272346--621fd1b89dddfda65d0b0126643f1b4a.nii.gz

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025683/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/V2/MD5E-s302413--04e291d46983c16451c1b93893c74a71.nii.gz/MD5E-s302413--04e291d46983c16451c1b93893c74a71.nii.gz

SWU_4/sub-0025683/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025683/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/PG/MD5E-s26677--e5b215b03117ae21fd8791ed30aa1a6a.nii.gz/MD5E-s26677--e5b215b03117ae21fd8791ed30aa1a6a.nii.gz

SWU_4/sub-0025683/ses-1/mri/aal3_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025683/ses-1/mri/aal3_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/FX/MD5E-s202276--56c0eef5b6a427737366096fc06108b3.nii.gz/MD5E-s202276--56c0eef5b6a427737366096fc06108b3.nii.gz

SWU_4/sub-0025683/ses-1/mri/anatomy3_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025683/ses-1/mri/anatomy3_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/q9/MD5E-s148207--7b7ebae69b2716742a5e8930cdd3edda.nii.gz/MD5E-s148207--7b7ebae69b2716742a5e8930cdd3edda.nii.gz

SWU_4/sub-0025683/ses-1/mri/anon_misub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/5p/MD5E-s10039958--5ded31063785b1c2cbf16cae3b89c08c.nii.gz/MD5E-s10039958--5ded31063785b1c2cbf16cae3b89c08c.nii.gz

SWU_4/sub-0025683/ses-1/mri/anon_msub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/m3/MD5E-s11595724--208d034cd9f2d4561e26687059dd6620.nii.gz/MD5E-s11595724--208d034cd9f2d4561e26687059dd6620.nii.gz

SWU_4/sub-0025683/ses-1/mri/cat_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/3x/MD5E-s106952--0ce4485aa23cb1bce92e8f598f38ac2b.nii.gz/MD5E-s106952--0ce4485aa23cb1bce92e8f598f38ac2b.nii.gz

SWU_4/sub-0025683/ses-1/mri/cobra_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025683/ses-1/mri/cobra_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z8/9Q/MD5E-s51066--ed6b7a4477e15d6822ace0d5cd104b52.nii.gz/MD5E-s51066--ed6b7a4477e15d6822ace0d5cd104b52.nii.gz

SWU_4/sub-0025683/ses-1/mri/hammers_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025683/ses-1/mri/hammers_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/54/MD5E-s162095--ee85941dea97e878347fcb3caa7fb126.nii.gz/MD5E-s162095--ee85941dea97e878347fcb3caa7fb126.nii.gz

SWU_4/sub-0025683/ses-1/mri/ibsr_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025683/ses-1/mri/ibsr_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/wx/MD5E-s168275--89f7be69a0b50e12e5bf580bed7f6198.nii.gz/MD5E-s168275--89f7be69a0b50e12e5bf580bed7f6198.nii.gz

SWU_4/sub-0025683/ses-1/mri/it_sub-0025683_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/3g/MD5E-s284--becd6981a36dca7547e27fb56bc9f7e4.mat/MD5E-s284--becd6981a36dca7547e27fb56bc9f7e4.mat

SWU_4/sub-0025683/ses-1/mri/it_sub-0025683_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/XK/MD5E-s283--a3a01640b0df79bbd6b82b4757f1730b.mat/MD5E-s283--a3a01640b0df79bbd6b82b4757f1730b.mat

SWU_4/sub-0025683/ses-1/mri/iy_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x7/KV/MD5E-s50926453--16d5e088c7190d7dccb767bc5d74d1c5.nii.gz/MD5E-s50926453--16d5e088c7190d7dccb767bc5d74d1c5.nii.gz

SWU_4/sub-0025683/ses-1/mri/julichbrain_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025683/ses-1/mri/julichbrain_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/wG/MD5E-s218629--4f7ec0ba87c7a7dfc6635a0dbbfe87d9.nii.gz/MD5E-s218629--4f7ec0ba87c7a7dfc6635a0dbbfe87d9.nii.gz

SWU_4/sub-0025683/ses-1/mri/lpba40_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025683/ses-1/mri/lpba40_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G0/7P/MD5E-s156188--1cd486b1c595e5a2fcaeda7cbaf0bfb5.nii.gz/MD5E-s156188--1cd486b1c595e5a2fcaeda7cbaf0bfb5.nii.gz

SWU_4/sub-0025683/ses-1/mri/m0wp1sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/2p/MD5E-s2572400--16faa727375a29d3a6bca62b227ac3a8.nii.gz/MD5E-s2572400--16faa727375a29d3a6bca62b227ac3a8.nii.gz

SWU_4/sub-0025683/ses-1/mri/m0wp2sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/79/MD5E-s2295598--76af03c951cd3bd2b4956e03871d5a51.nii.gz/MD5E-s2295598--76af03c951cd3bd2b4956e03871d5a51.nii.gz

SWU_4/sub-0025683/ses-1/mri/m0wp3sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/gP/MD5E-s2462526--01e09ccd63f933c24a09b8e07453e32d.nii.gz/MD5E-s2462526--01e09ccd63f933c24a09b8e07453e32d.nii.gz

SWU_4/sub-0025683/ses-1/mri/mori_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025683/ses-1/mri/mori_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/0F/MD5E-s187417--accb6ff24e46edfc3119d7c8499985f8.nii.gz/MD5E-s187417--accb6ff24e46edfc3119d7c8499985f8.nii.gz

SWU_4/sub-0025683/ses-1/mri/mwp1sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/FM/MD5E-s2571830--dc98d63088c6d78a74530a989ff64f8d.nii.gz/MD5E-s2571830--dc98d63088c6d78a74530a989ff64f8d.nii.gz

SWU_4/sub-0025683/ses-1/mri/mwp2sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/3x/MD5E-s2293748--563d411d55522b9b8eb70036b6037ce2.nii.gz/MD5E-s2293748--563d411d55522b9b8eb70036b6037ce2.nii.gz

SWU_4/sub-0025683/ses-1/mri/mwp3sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025683/ses-1/mri/neuromorphometrics_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025683/ses-1/mri/neuromorphometrics_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025683/ses-1/mri/p0sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/wQ/MD5E-s694165--5d746804b93964805b0c0c7f3bcfec27.nii.gz/MD5E-s694165--5d746804b93964805b0c0c7f3bcfec27.nii.gz

SWU_4/sub-0025683/ses-1/mri/p1sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/17/MD5E-s741520--59f3198427cefac6a7943d403e581aa3.nii.gz/MD5E-s741520--59f3198427cefac6a7943d403e581aa3.nii.gz

SWU_4/sub-0025683/ses-1/mri/p2sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/8k/MD5E-s498193--9109a99f1706954fac17df3e84bb3da2.nii.gz/MD5E-s498193--9109a99f1706954fac17df3e84bb3da2.nii.gz

SWU_4/sub-0025683/ses-1/mri/p3sub-0025683_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025683/ses-1/mri/rp1sub-0025683_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025683/ses-1/mri/rp2sub-0025683_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025683/ses-1/mri/rp3sub-0025683_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025683/ses-1/mri/t_sub-0025683_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025683/ses-1/mri/t_sub-0025683_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/Zm/MD5E-s284--35406919965df22a87def2e53b7f0ae7.mat/MD5E-s284--35406919965df22a87def2e53b7f0ae7.mat

SWU_4/sub-0025683/ses-1/mri/thalamus_sub-0025683_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025683/ses-1/mri/thalamus_sub-0025683_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025683/ses-1/mri/wj_sub-0025683_ses-1_run-1_T1w.nii.gz

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