[DATALAD RUNCMD] Compute BNU_2/sub-0025929/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025929/ses-2/anat/sub-0025929_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025929/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025929/ses-2/label/catROI_sub-0025929_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/52/MD5E-s61267--8bbbf557ee2b64d408a2b88d4eb95529.mat/MD5E-s61267--8bbbf557ee2b64d408a2b88d4eb95529.mat

BNU_2/sub-0025929/ses-2/label/catROI_sub-0025929_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/7W/MD5E-s188675--47befc41a3e1df5b9dd068f3ebca3433.xml/MD5E-s188675--47befc41a3e1df5b9dd068f3ebca3433.xml

BNU_2/sub-0025929/ses-2/label/catROIs_sub-0025929_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/PM/MD5E-s120101--3249cf91731ab825124e1f00af89c941.mat/MD5E-s120101--3249cf91731ab825124e1f00af89c941.mat

BNU_2/sub-0025929/ses-2/label/catROIs_sub-0025929_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/2J/MD5E-s332044--e6c68231d1372b5ee5a5dfea5f6b28be.xml/MD5E-s332044--e6c68231d1372b5ee5a5dfea5f6b28be.xml

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/v1/MD5E-s169985--e78215839817cb30f9d4806a6b192cd4.nii.gz/MD5E-s169985--e78215839817cb30f9d4806a6b192cd4.nii.gz

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/kj/MD5E-s188794--1bfb4ec428451f0ff7541ae98a6ed564.nii.gz/MD5E-s188794--1bfb4ec428451f0ff7541ae98a6ed564.nii.gz

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fM/7Q/MD5E-s255137--10367d9fd7e9e82810d6533f6fabf4d7.nii.gz/MD5E-s255137--10367d9fd7e9e82810d6533f6fabf4d7.nii.gz

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025929/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PZ/jW/MD5E-s282933--f4e5628d9a536c556e6df1a57a57fff7.nii.gz/MD5E-s282933--f4e5628d9a536c556e6df1a57a57fff7.nii.gz

BNU_2/sub-0025929/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025929/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/XZ/MD5E-s24580--0af91261e662d80290dd16546371f5ab.nii.gz/MD5E-s24580--0af91261e662d80290dd16546371f5ab.nii.gz

BNU_2/sub-0025929/ses-2/mri/aal3_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025929/ses-2/mri/aal3_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/Gz/MD5E-s190716--b5c543dcc85e5f9164b865c02103751b.nii.gz/MD5E-s190716--b5c543dcc85e5f9164b865c02103751b.nii.gz

BNU_2/sub-0025929/ses-2/mri/anatomy3_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025929/ses-2/mri/anatomy3_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/VF/MD5E-s140500--f8b0ab021a96afcff46e1ce8728b1a75.nii.gz/MD5E-s140500--f8b0ab021a96afcff46e1ce8728b1a75.nii.gz

BNU_2/sub-0025929/ses-2/mri/anon_misub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/6M/MD5E-s4730952--04c7353181d890fd609aaea4573c593f.nii.gz/MD5E-s4730952--04c7353181d890fd609aaea4573c593f.nii.gz

BNU_2/sub-0025929/ses-2/mri/anon_msub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/FK/MD5E-s10615071--e38a8e7a5521016881dd65c9d8870886.nii.gz/MD5E-s10615071--e38a8e7a5521016881dd65c9d8870886.nii.gz

BNU_2/sub-0025929/ses-2/mri/cat_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/30/MD5E-s102799--b2b328448a585dad865679d469f027eb.nii.gz/MD5E-s102799--b2b328448a585dad865679d469f027eb.nii.gz

BNU_2/sub-0025929/ses-2/mri/cobra_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025929/ses-2/mri/cobra_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/w2/MD5E-s50721--a29b7d4301ffa9f5cb3a3ea98631f24c.nii.gz/MD5E-s50721--a29b7d4301ffa9f5cb3a3ea98631f24c.nii.gz

BNU_2/sub-0025929/ses-2/mri/hammers_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025929/ses-2/mri/hammers_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/gX/MD5E-s151128--9cbff6c35b79db6b750f7aa4445b1db1.nii.gz/MD5E-s151128--9cbff6c35b79db6b750f7aa4445b1db1.nii.gz

BNU_2/sub-0025929/ses-2/mri/ibsr_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025929/ses-2/mri/ibsr_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/5p/MD5E-s159149--c1418ab628339e770047603469b054db.nii.gz/MD5E-s159149--c1418ab628339e770047603469b054db.nii.gz

BNU_2/sub-0025929/ses-2/mri/it_sub-0025929_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/g2/MD5E-s284--c77620718215ab80ced3d0a7c65e978a.mat/MD5E-s284--c77620718215ab80ced3d0a7c65e978a.mat

BNU_2/sub-0025929/ses-2/mri/it_sub-0025929_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/x3/MD5E-s283--10c5521881b74210fbb54392c7772d09.mat/MD5E-s283--10c5521881b74210fbb54392c7772d09.mat

BNU_2/sub-0025929/ses-2/mri/iy_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/G2/MD5E-s48850371--fdba2f0681e2e98860b5fa1fbb34075f.nii.gz/MD5E-s48850371--fdba2f0681e2e98860b5fa1fbb34075f.nii.gz

BNU_2/sub-0025929/ses-2/mri/julichbrain_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025929/ses-2/mri/julichbrain_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/xj/MD5E-s204545--ab00b7c28742edb14cd58aae06a3d581.nii.gz/MD5E-s204545--ab00b7c28742edb14cd58aae06a3d581.nii.gz

BNU_2/sub-0025929/ses-2/mri/lpba40_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025929/ses-2/mri/lpba40_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/g4/MD5E-s147142--d5c40597eb9e840bd41f4bafc1e056a8.nii.gz/MD5E-s147142--d5c40597eb9e840bd41f4bafc1e056a8.nii.gz

BNU_2/sub-0025929/ses-2/mri/m0wp1sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MV/Xx/MD5E-s2571152--54a4837f4c7cb241a79a672ca2372c56.nii.gz/MD5E-s2571152--54a4837f4c7cb241a79a672ca2372c56.nii.gz

BNU_2/sub-0025929/ses-2/mri/m0wp2sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/px/MD5E-s2288063--750b1d9b86642c95669077f3d0671a51.nii.gz/MD5E-s2288063--750b1d9b86642c95669077f3d0671a51.nii.gz

BNU_2/sub-0025929/ses-2/mri/m0wp3sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/Zx/MD5E-s2562044--f55c637c7e32c1c3aedd2821547fb6e4.nii.gz/MD5E-s2562044--f55c637c7e32c1c3aedd2821547fb6e4.nii.gz

BNU_2/sub-0025929/ses-2/mri/mori_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025929/ses-2/mri/mori_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/kv/MD5E-s176821--eb6ca0414cd1025d683a9222a25784e8.nii.gz/MD5E-s176821--eb6ca0414cd1025d683a9222a25784e8.nii.gz

BNU_2/sub-0025929/ses-2/mri/mwp1sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/k4/MD5E-s2573738--0164235b8fff7054f9f9a95a74ecf4d0.nii.gz/MD5E-s2573738--0164235b8fff7054f9f9a95a74ecf4d0.nii.gz

BNU_2/sub-0025929/ses-2/mri/mwp2sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/74/MD5E-s2286241--ab0993ec85840b66e9f8ccc3ccc67d77.nii.gz/MD5E-s2286241--ab0993ec85840b66e9f8ccc3ccc67d77.nii.gz

BNU_2/sub-0025929/ses-2/mri/mwp3sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025929/ses-2/mri/neuromorphometrics_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025929/ses-2/mri/neuromorphometrics_sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025929/ses-2/mri/p0sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/Xm/MD5E-s642528--b1366c50d4df7b997d7095519b8b0960.nii.gz/MD5E-s642528--b1366c50d4df7b997d7095519b8b0960.nii.gz

BNU_2/sub-0025929/ses-2/mri/p1sub-0025929_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025929/ses-2/mri/p2sub-0025929_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025929/ses-2/mri/p3sub-0025929_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025929/ses-2/mri/rp1sub-0025929_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025929/ses-2/mri/rp2sub-0025929_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025929/ses-2/mri/rp3sub-0025929_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025929/ses-2/mri/t_sub-0025929_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025929/ses-2/mri/t_sub-0025929_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025929/ses-2/mri/thalamus_sub-0025929_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025929/ses-2/mri/thalamus_sub-0025929_ses-2_run-1_T1w.nii.gz

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