[DATALAD RUNCMD] Compute IPCAS_4/sub-0026196/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_4/sub-0026196/ses-1/anat/sub-0026196_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_4/sub-0026196/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_4/sub-0026196/ses-1/label/catROI_sub-0026196_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/q0/MD5E-s61397--e9b311b801803c227c5d7021ab9e027d.mat/MD5E-s61397--e9b311b801803c227c5d7021ab9e027d.mat

IPCAS_4/sub-0026196/ses-1/label/catROI_sub-0026196_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/54/MD5E-s188982--c5996b7deae0414a78b674e29ce7bfbf.xml/MD5E-s188982--c5996b7deae0414a78b674e29ce7bfbf.xml

IPCAS_4/sub-0026196/ses-1/label/catROIs_sub-0026196_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/4z/MD5E-s120036--f6bdd7ac4270e164f975dca8e3cd2deb.mat/MD5E-s120036--f6bdd7ac4270e164f975dca8e3cd2deb.mat

IPCAS_4/sub-0026196/ses-1/label/catROIs_sub-0026196_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/kk/MD5E-s332196--6eb2700d3f1b0d45b778ca2d880b6e27.xml/MD5E-s332196--6eb2700d3f1b0d45b778ca2d880b6e27.xml

IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/aal3_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/aal3_sub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/anatomy3_sub-0026196_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/anatomy3_sub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/Kf/MD5E-s150743--c87f379b2bc4001502982810f8a05647.nii.gz/MD5E-s150743--c87f379b2bc4001502982810f8a05647.nii.gz

IPCAS_4/sub-0026196/ses-1/mri/anon_misub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/anon_msub-0026196_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/v4/MD5E-s10366390--0a8775d182f7ab9c89523ef31c002450.nii.gz/MD5E-s10366390--0a8775d182f7ab9c89523ef31c002450.nii.gz

IPCAS_4/sub-0026196/ses-1/mri/cat_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/cobra_sub-0026196_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/cobra_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/hammers_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/hammers_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/ibsr_sub-0026196_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_4/sub-0026196/ses-1/mri/ibsr_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/it_sub-0026196_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WW/1q/MD5E-s284--f6ff4d23e65c1815c72caaeaa4a93692.mat/MD5E-s284--f6ff4d23e65c1815c72caaeaa4a93692.mat

IPCAS_4/sub-0026196/ses-1/mri/it_sub-0026196_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_4/sub-0026196/ses-1/mri/iy_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/julichbrain_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/julichbrain_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/lpba40_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/lpba40_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/m0wp1sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/m0wp2sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/m0wp3sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/mori_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/mori_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/mwp1sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/mwp2sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/mwp3sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/neuromorphometrics_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/neuromorphometrics_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/p0sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/p1sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/p2sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/p3sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/rp1sub-0026196_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/rp2sub-0026196_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/rp3sub-0026196_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/t_sub-0026196_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_4/sub-0026196/ses-1/mri/t_sub-0026196_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_4/sub-0026196/ses-1/mri/thalamus_sub-0026196_ses-1_run-1_T1w.csv

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IPCAS_4/sub-0026196/ses-1/mri/thalamus_sub-0026196_ses-1_run-1_T1w.nii.gz

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IPCAS_4/sub-0026196/ses-1/mri/wj_sub-0026196_ses-1_run-1_T1w.nii.gz

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