[DATALAD RUNCMD] Compute NYU_2/sub-0025168/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025168/ses-1/anat/sub-0025168_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025168/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025168/ses-1/label/catROI_sub-0025168_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/gv/MD5E-s58023--eb328317e787928386b7ae2295018086.mat/MD5E-s58023--eb328317e787928386b7ae2295018086.mat

NYU_2/sub-0025168/ses-1/label/catROI_sub-0025168_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/MX/MD5E-s188609--87d9e4ac12fb3d5b125c64d9246d624e.xml/MD5E-s188609--87d9e4ac12fb3d5b125c64d9246d624e.xml

NYU_2/sub-0025168/ses-1/label/catROIs_sub-0025168_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/xZ/MD5E-s120149--c1f449350c3b0c8545be29e6df168272.mat/MD5E-s120149--c1f449350c3b0c8545be29e6df168272.mat

NYU_2/sub-0025168/ses-1/label/catROIs_sub-0025168_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/WG/MD5E-s332175--9f5084e3767f7bc92c0ae255ede140c6.xml/MD5E-s332175--9f5084e3767f7bc92c0ae255ede140c6.xml

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/2M/MD5E-s157550--9ec04271881cb6f9de7521f279a7dbfa.nii.gz/MD5E-s157550--9ec04271881cb6f9de7521f279a7dbfa.nii.gz

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/gK/MD5E-s175196--d9ec177290b3720e094bca8e56813dd5.nii.gz/MD5E-s175196--d9ec177290b3720e094bca8e56813dd5.nii.gz

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/XW/MD5E-s236004--843141e9d50050d8798923fa2be459b9.nii.gz/MD5E-s236004--843141e9d50050d8798923fa2be459b9.nii.gz

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025168/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/Vj/MD5E-s261346--a1ad7a11b49c3273a32a57dde9bdb229.nii.gz/MD5E-s261346--a1ad7a11b49c3273a32a57dde9bdb229.nii.gz

NYU_2/sub-0025168/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025168/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/jV/MD5E-s20702--30073d86b8cf2ab5064a16bbacc03c9d.nii.gz/MD5E-s20702--30073d86b8cf2ab5064a16bbacc03c9d.nii.gz

NYU_2/sub-0025168/ses-1/mri/aal3_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025168/ses-1/mri/aal3_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fG/Pf/MD5E-s179460--6c4a700438e96b3b2e6a2f336b99a6e2.nii.gz/MD5E-s179460--6c4a700438e96b3b2e6a2f336b99a6e2.nii.gz

NYU_2/sub-0025168/ses-1/mri/anatomy3_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025168/ses-1/mri/anatomy3_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/9m/MD5E-s123449--d656511ba947e5d49d437f0372e7a433.nii.gz/MD5E-s123449--d656511ba947e5d49d437f0372e7a433.nii.gz

NYU_2/sub-0025168/ses-1/mri/anon_misub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/qZ/MD5E-s4376450--544f4ce16370977ef2ec9229ddd5f3a3.nii.gz/MD5E-s4376450--544f4ce16370977ef2ec9229ddd5f3a3.nii.gz

NYU_2/sub-0025168/ses-1/mri/anon_msub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/Mm/MD5E-s9415063--ea5a66cee1b8ea8c342cb51e8b556ffc.nii.gz/MD5E-s9415063--ea5a66cee1b8ea8c342cb51e8b556ffc.nii.gz

NYU_2/sub-0025168/ses-1/mri/cat_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/Zz/MD5E-s97615--e4ee01a7ebd7f57fc6c6987ff4e38129.nii.gz/MD5E-s97615--e4ee01a7ebd7f57fc6c6987ff4e38129.nii.gz

NYU_2/sub-0025168/ses-1/mri/cobra_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025168/ses-1/mri/cobra_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/V4/MD5E-s40747--0507aa60c100bc9636e27cc8d918c9dd.nii.gz/MD5E-s40747--0507aa60c100bc9636e27cc8d918c9dd.nii.gz

NYU_2/sub-0025168/ses-1/mri/hammers_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025168/ses-1/mri/hammers_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/g9/MD5E-s137162--ab3e37515d69cdcdfb678f3a5b49dd23.nii.gz/MD5E-s137162--ab3e37515d69cdcdfb678f3a5b49dd23.nii.gz

NYU_2/sub-0025168/ses-1/mri/ibsr_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025168/ses-1/mri/ibsr_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/fK/MD5E-s146866--521bc2e2d77b9b3cd46650d615fe79aa.nii.gz/MD5E-s146866--521bc2e2d77b9b3cd46650d615fe79aa.nii.gz

NYU_2/sub-0025168/ses-1/mri/it_sub-0025168_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/Kq/MD5E-s283--e1333c34e951b70557e29c5e3a8e27f5.mat/MD5E-s283--e1333c34e951b70557e29c5e3a8e27f5.mat

NYU_2/sub-0025168/ses-1/mri/it_sub-0025168_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/qX/MD5E-s284--5a37a63de426b1a603fcbae737b00339.mat/MD5E-s284--5a37a63de426b1a603fcbae737b00339.mat

NYU_2/sub-0025168/ses-1/mri/iy_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/WW/MD5E-s38547946--d4dc861c75243f492a602db14a62afe3.nii.gz/MD5E-s38547946--d4dc861c75243f492a602db14a62afe3.nii.gz

NYU_2/sub-0025168/ses-1/mri/julichbrain_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025168/ses-1/mri/julichbrain_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9X/Xk/MD5E-s185042--e16cc6efc206ca7fc31287a575c73ed2.nii.gz/MD5E-s185042--e16cc6efc206ca7fc31287a575c73ed2.nii.gz

NYU_2/sub-0025168/ses-1/mri/lpba40_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025168/ses-1/mri/lpba40_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025168/ses-1/mri/m0wp1sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/3z/MD5E-s2584120--4367b70a18bdd02cd5929800721ce74b.nii.gz/MD5E-s2584120--4367b70a18bdd02cd5929800721ce74b.nii.gz

NYU_2/sub-0025168/ses-1/mri/m0wp2sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/mP/MD5E-s2285102--4132c3d835fac810a7e87f688f319a25.nii.gz/MD5E-s2285102--4132c3d835fac810a7e87f688f319a25.nii.gz

NYU_2/sub-0025168/ses-1/mri/m0wp3sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025168/ses-1/mri/mori_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025168/ses-1/mri/mori_sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025168/ses-1/mri/mwp1sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/Wg/MD5E-s2583358--f607fc7837dd32360e6459ce6fdace40.nii.gz/MD5E-s2583358--f607fc7837dd32360e6459ce6fdace40.nii.gz

NYU_2/sub-0025168/ses-1/mri/mwp2sub-0025168_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025168/ses-1/mri/mwp3sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025168/ses-1/mri/neuromorphometrics_sub-0025168_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025168/ses-1/mri/neuromorphometrics_sub-0025168_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025168/ses-1/mri/p0sub-0025168_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025168/ses-1/mri/p1sub-0025168_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025168/ses-1/mri/p2sub-0025168_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025168/ses-1/mri/p3sub-0025168_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025168/ses-1/mri/rp1sub-0025168_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025168/ses-1/mri/rp2sub-0025168_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025168/ses-1/mri/rp3sub-0025168_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025168/ses-1/mri/t_sub-0025168_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025168/ses-1/mri/t_sub-0025168_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025168/ses-1/mri/thalamus_sub-0025168_ses-1_run-1_T1w.csv

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NYU_2/sub-0025168/ses-1/mri/thalamus_sub-0025168_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025168/ses-1/mri/wj_sub-0025168_ses-1_run-1_T1w.nii.gz

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