[DATALAD RUNCMD] Compute SWU_2/sub-0027186/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027186/ses-1/anat/sub-0027186_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027186/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027186/ses-1/label/catROI_sub-0027186_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/WW/MD5E-s61148--da6fb4846915c5b80f4d72235984c4ce.mat/MD5E-s61148--da6fb4846915c5b80f4d72235984c4ce.mat

SWU_2/sub-0027186/ses-1/label/catROI_sub-0027186_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/KW/MD5E-s188876--7412217dfd5e33cdebd7868275e77757.xml/MD5E-s188876--7412217dfd5e33cdebd7868275e77757.xml

SWU_2/sub-0027186/ses-1/label/catROIs_sub-0027186_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/vw/MD5E-s120025--ed6da88dba0bed9319a78fcb5edbd792.mat/MD5E-s120025--ed6da88dba0bed9319a78fcb5edbd792.mat

SWU_2/sub-0027186/ses-1/label/catROIs_sub-0027186_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/Qw/MD5E-s332138--fe3301c50a0672560dced1a2b945cdd4.xml/MD5E-s332138--fe3301c50a0672560dced1a2b945cdd4.xml

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PM/vg/MD5E-s160087--2c211daa52225d47d73cb0bdb0f24d71.nii.gz/MD5E-s160087--2c211daa52225d47d73cb0bdb0f24d71.nii.gz

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/wW/MD5E-s179437--2616cb5dcd0b1f625c4735154cae98ec.nii.gz/MD5E-s179437--2616cb5dcd0b1f625c4735154cae98ec.nii.gz

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/P4/MD5E-s242553--cfa155cec835ac7baf275bf5483e155a.nii.gz/MD5E-s242553--cfa155cec835ac7baf275bf5483e155a.nii.gz

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027186/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/P6/MD5E-s270796--b4b03323613073985cb4b82394cf6ba8.nii.gz/MD5E-s270796--b4b03323613073985cb4b82394cf6ba8.nii.gz

SWU_2/sub-0027186/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027186/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/WZ/MD5E-s25483--5eee93caab187be88714d2ba9c88a720.nii.gz/MD5E-s25483--5eee93caab187be88714d2ba9c88a720.nii.gz

SWU_2/sub-0027186/ses-1/mri/aal3_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027186/ses-1/mri/aal3_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/kM/MD5E-s184216--fd17d18912584b897ef54ce0caf4d910.nii.gz/MD5E-s184216--fd17d18912584b897ef54ce0caf4d910.nii.gz

SWU_2/sub-0027186/ses-1/mri/anatomy3_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027186/ses-1/mri/anatomy3_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kw/vf/MD5E-s131935--81bd726f18bb666f0d3be0f9601c3af9.nii.gz/MD5E-s131935--81bd726f18bb666f0d3be0f9601c3af9.nii.gz

SWU_2/sub-0027186/ses-1/mri/anon_misub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/9k/MD5E-s7587720--e8d89f7890ec0fce38e89e1ef744a20c.nii.gz/MD5E-s7587720--e8d89f7890ec0fce38e89e1ef744a20c.nii.gz

SWU_2/sub-0027186/ses-1/mri/anon_msub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wj/kM/MD5E-s7305759--71f2ca0d54b87876928c5ab015de9d02.nii.gz/MD5E-s7305759--71f2ca0d54b87876928c5ab015de9d02.nii.gz

SWU_2/sub-0027186/ses-1/mri/cat_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027186/ses-1/mri/cobra_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027186/ses-1/mri/cobra_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027186/ses-1/mri/hammers_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027186/ses-1/mri/hammers_sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/ibsr_sub-0027186_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027186/ses-1/mri/ibsr_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/Xj/MD5E-s152051--7d856dc6c07737e87412e35f51c2c4b0.nii.gz/MD5E-s152051--7d856dc6c07737e87412e35f51c2c4b0.nii.gz

SWU_2/sub-0027186/ses-1/mri/it_sub-0027186_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/wf/MD5E-s283--80dfd0cfb7020d4624fa3bbae500b33f.mat/MD5E-s283--80dfd0cfb7020d4624fa3bbae500b33f.mat

SWU_2/sub-0027186/ses-1/mri/it_sub-0027186_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/J3/MD5E-s283--0d77fd7c0549022ae0f65fd7bbdc06e8.mat/MD5E-s283--0d77fd7c0549022ae0f65fd7bbdc06e8.mat

SWU_2/sub-0027186/ses-1/mri/iy_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/WP/MD5E-s44479762--e3b7ce5c1661deef27028e20b9c99cd1.nii.gz/MD5E-s44479762--e3b7ce5c1661deef27028e20b9c99cd1.nii.gz

SWU_2/sub-0027186/ses-1/mri/julichbrain_sub-0027186_ses-1_run-1_T1w.csv

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SWU_2/sub-0027186/ses-1/mri/julichbrain_sub-0027186_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027186/ses-1/mri/lpba40_sub-0027186_ses-1_run-1_T1w.csv

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SWU_2/sub-0027186/ses-1/mri/lpba40_sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/m0wp1sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/m0wp2sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/m0wp3sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/mori_sub-0027186_ses-1_run-1_T1w.csv

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SWU_2/sub-0027186/ses-1/mri/mori_sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/mwp1sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/mwp2sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/mwp3sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/neuromorphometrics_sub-0027186_ses-1_run-1_T1w.csv

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SWU_2/sub-0027186/ses-1/mri/neuromorphometrics_sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/p0sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/p1sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/p2sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/p3sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/rp1sub-0027186_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027186/ses-1/mri/rp2sub-0027186_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027186/ses-1/mri/rp3sub-0027186_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027186/ses-1/mri/t_sub-0027186_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027186/ses-1/mri/t_sub-0027186_ses-1_run-1_T1w_rigid_reorient.mat

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SWU_2/sub-0027186/ses-1/mri/thalamus_sub-0027186_ses-1_run-1_T1w.csv

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SWU_2/sub-0027186/ses-1/mri/thalamus_sub-0027186_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027186/ses-1/mri/wj_sub-0027186_ses-1_run-1_T1w.nii.gz

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