[DATALAD RUNCMD] Compute IPCAS_8/sub-0025596/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_8/sub-0025596/ses-1/anat/sub-0025596_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_8/sub-0025596/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_8/sub-0025596/ses-1/label/catROI_sub-0025596_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/vk/MD5E-s61276--1576e5613df0decefa1fa492e30ecaf4.mat/MD5E-s61276--1576e5613df0decefa1fa492e30ecaf4.mat

IPCAS_8/sub-0025596/ses-1/label/catROI_sub-0025596_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/95/MD5E-s189147--84bdbc047ba5746d2f40774b797aceab.xml/MD5E-s189147--84bdbc047ba5746d2f40774b797aceab.xml

IPCAS_8/sub-0025596/ses-1/label/catROIs_sub-0025596_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/Qm/MD5E-s120134--269e973a74bd47befd683ce7c3cdf6c0.mat/MD5E-s120134--269e973a74bd47befd683ce7c3cdf6c0.mat

IPCAS_8/sub-0025596/ses-1/label/catROIs_sub-0025596_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/wx/MD5E-s332127--6f2a8994bdbbb90abedc891c560e0d23.xml/MD5E-s332127--6f2a8994bdbbb90abedc891c560e0d23.xml

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/zm/MD5E-s136274--80bfafa645ff35919c757df0bc3b965b.nii.gz/MD5E-s136274--80bfafa645ff35919c757df0bc3b965b.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/Z3/MD5E-s152264--d4e68e315d70b619d7d26f1d385a428a.nii.gz/MD5E-s152264--d4e68e315d70b619d7d26f1d385a428a.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/vG/MD5E-s203380--31765c97889d877c95744d6500131626.nii.gz/MD5E-s203380--31765c97889d877c95744d6500131626.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_8/sub-0025596/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/v0/MD5E-s224812--6d6da001b579b909075afffac65fb9d1.nii.gz/MD5E-s224812--6d6da001b579b909075afffac65fb9d1.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_8/sub-0025596/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/Qg/MD5E-s17839--8eaa18154c6d07f10b4ee856c7bf2cad.nii.gz/MD5E-s17839--8eaa18154c6d07f10b4ee856c7bf2cad.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/aal3_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_8/sub-0025596/ses-1/mri/aal3_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/1W/MD5E-s153772--65ce80b8cd7d20904cd35c4b9d6319cf.nii.gz/MD5E-s153772--65ce80b8cd7d20904cd35c4b9d6319cf.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/anatomy3_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_8/sub-0025596/ses-1/mri/anatomy3_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/qZ/MD5E-s108204--b2ed6f7799fe6c7c7079a07e3fcaffec.nii.gz/MD5E-s108204--b2ed6f7799fe6c7c7079a07e3fcaffec.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/anon_misub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/mZ/MD5E-s3673208--00282b5a6346991cf4c01f662e0a16b1.nii.gz/MD5E-s3673208--00282b5a6346991cf4c01f662e0a16b1.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/anon_msub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/Q3/MD5E-s9376543--b00bc7ac66d6db04b0ea7c7c6c05223c.nii.gz/MD5E-s9376543--b00bc7ac66d6db04b0ea7c7c6c05223c.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/cat_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/JF/MD5E-s81719--b149d8e7dff8e7098f993c6bc983ea13.nii.gz/MD5E-s81719--b149d8e7dff8e7098f993c6bc983ea13.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/cobra_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_8/sub-0025596/ses-1/mri/cobra_sub-0025596_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/W0/1q/MD5E-s36420--043abb41c615b4680829f4475183c3c6.nii.gz/MD5E-s36420--043abb41c615b4680829f4475183c3c6.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/hammers_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_8/sub-0025596/ses-1/mri/hammers_sub-0025596_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Z2/11/MD5E-s120336--215663093875613f791eef8eb7292506.nii.gz/MD5E-s120336--215663093875613f791eef8eb7292506.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/ibsr_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_8/sub-0025596/ses-1/mri/ibsr_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/Qw/MD5E-s126782--34d922c109b739c686dbdce7c14aee37.nii.gz/MD5E-s126782--34d922c109b739c686dbdce7c14aee37.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/it_sub-0025596_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/JZ/MD5E-s283--b19e01e67a6f0f910077a869a4cd1027.mat/MD5E-s283--b19e01e67a6f0f910077a869a4cd1027.mat

IPCAS_8/sub-0025596/ses-1/mri/it_sub-0025596_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/Z7/MD5E-s282--345c008089e7924d24dcc3ee9a73bf12.mat/MD5E-s282--345c008089e7924d24dcc3ee9a73bf12.mat

IPCAS_8/sub-0025596/ses-1/mri/iy_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/JX/MD5E-s31295505--87205842e03b994002be3176cc65ce02.nii.gz/MD5E-s31295505--87205842e03b994002be3176cc65ce02.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/julichbrain_sub-0025596_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_8/sub-0025596/ses-1/mri/julichbrain_sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/z8/MD5E-s162140--39eef5022464433f348f91546e42a96e.nii.gz/MD5E-s162140--39eef5022464433f348f91546e42a96e.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/lpba40_sub-0025596_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025596/ses-1/mri/lpba40_sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/m0wp1sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/m0wp2sub-0025596_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/W8/MD5E-s2285920--9a41d33b2609e860984d131f55c97580.nii.gz/MD5E-s2285920--9a41d33b2609e860984d131f55c97580.nii.gz

IPCAS_8/sub-0025596/ses-1/mri/m0wp3sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/mori_sub-0025596_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025596/ses-1/mri/mori_sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/mwp1sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/mwp2sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/mwp3sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/neuromorphometrics_sub-0025596_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025596/ses-1/mri/neuromorphometrics_sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/p0sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/p1sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/p2sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/p3sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/rp1sub-0025596_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/rp2sub-0025596_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/rp3sub-0025596_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/t_sub-0025596_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_8/sub-0025596/ses-1/mri/t_sub-0025596_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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IPCAS_8/sub-0025596/ses-1/mri/thalamus_sub-0025596_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025596/ses-1/mri/thalamus_sub-0025596_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025596/ses-1/mri/wj_sub-0025596_ses-1_run-1_T1w.nii.gz

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