[DATALAD RUNCMD] Compute XHCUMS/sub-0025989/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0025989/ses-1/anat/sub-0025989_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0025989/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0025989/ses-1/label/catROI_sub-0025989_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/pg/MD5E-s61285--58487c244666c9f7186361c47cb0a4aa.mat/MD5E-s61285--58487c244666c9f7186361c47cb0a4aa.mat

XHCUMS/sub-0025989/ses-1/label/catROI_sub-0025989_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/GZ/MD5E-s188736--18024607498e07dc330cc3e700225a41.xml/MD5E-s188736--18024607498e07dc330cc3e700225a41.xml

XHCUMS/sub-0025989/ses-1/label/catROIs_sub-0025989_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/kQ/MD5E-s120148--3437082791e605805cc3e79ab4c3d99d.mat/MD5E-s120148--3437082791e605805cc3e79ab4c3d99d.mat

XHCUMS/sub-0025989/ses-1/label/catROIs_sub-0025989_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/6x/MD5E-s332161--b6acd5122e94e4fda7a290cab58199d7.xml/MD5E-s332161--b6acd5122e94e4fda7a290cab58199d7.xml

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/Kw/MD5E-s168626--b5bbde43ca2faffedd8e065194f1cddf.nii.gz/MD5E-s168626--b5bbde43ca2faffedd8e065194f1cddf.nii.gz

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/92/pv/MD5E-s187800--9f00d54dd69fda9c5cc93b61ed3ae86e.nii.gz/MD5E-s187800--9f00d54dd69fda9c5cc93b61ed3ae86e.nii.gz

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/gx/MD5E-s254741--d00ce29342d8f6cc119adcc3b197a2d8.nii.gz/MD5E-s254741--d00ce29342d8f6cc119adcc3b197a2d8.nii.gz

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0025989/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/mM/MD5E-s282688--9ffe8accb2507ca623dd5ed1419a826a.nii.gz/MD5E-s282688--9ffe8accb2507ca623dd5ed1419a826a.nii.gz

XHCUMS/sub-0025989/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025989/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/GF/MD5E-s24587--2255c0fc0446114103bd53e78cc0b050.nii.gz/MD5E-s24587--2255c0fc0446114103bd53e78cc0b050.nii.gz

XHCUMS/sub-0025989/ses-1/mri/aal3_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

XHCUMS/sub-0025989/ses-1/mri/aal3_sub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/k5/MD5E-s187296--06a7f64194f0e9f60c329f7867bd9b05.nii.gz/MD5E-s187296--06a7f64194f0e9f60c329f7867bd9b05.nii.gz

XHCUMS/sub-0025989/ses-1/mri/anatomy3_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025989/ses-1/mri/anatomy3_sub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/J4/MD5E-s137992--0b20bc0f45ea590c92debdf2d25b48af.nii.gz/MD5E-s137992--0b20bc0f45ea590c92debdf2d25b48af.nii.gz

XHCUMS/sub-0025989/ses-1/mri/anon_misub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0025989/ses-1/mri/anon_msub-0025989_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/4g/MD5E-s10444937--2c4ef68a5acc1b00e1af7abe26af26e2.nii.gz/MD5E-s10444937--2c4ef68a5acc1b00e1af7abe26af26e2.nii.gz

XHCUMS/sub-0025989/ses-1/mri/cat_sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/cobra_sub-0025989_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

XHCUMS/sub-0025989/ses-1/mri/cobra_sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/hammers_sub-0025989_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

XHCUMS/sub-0025989/ses-1/mri/hammers_sub-0025989_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Gm/MM/MD5E-s149718--f982e251e08837a6057ba60679371214.nii.gz/MD5E-s149718--f982e251e08837a6057ba60679371214.nii.gz

XHCUMS/sub-0025989/ses-1/mri/ibsr_sub-0025989_ses-1_run-1_T1w.csv

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XHCUMS/sub-0025989/ses-1/mri/ibsr_sub-0025989_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Qq/zg/MD5E-s157530--866e273ad63b29105683b4258e2c0498.nii.gz/MD5E-s157530--866e273ad63b29105683b4258e2c0498.nii.gz

XHCUMS/sub-0025989/ses-1/mri/it_sub-0025989_ses-1_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/f4/1F/MD5E-s284--f3da4d96fd808a5ee627f670cbf9077b.mat/MD5E-s284--f3da4d96fd808a5ee627f670cbf9077b.mat

XHCUMS/sub-0025989/ses-1/mri/it_sub-0025989_ses-1_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/Xk/mw/MD5E-s284--3e32d111a94213c54f75783b74e5bd2e.mat/MD5E-s284--3e32d111a94213c54f75783b74e5bd2e.mat

XHCUMS/sub-0025989/ses-1/mri/iy_sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/julichbrain_sub-0025989_ses-1_run-1_T1w.csv

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XHCUMS/sub-0025989/ses-1/mri/julichbrain_sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/lpba40_sub-0025989_ses-1_run-1_T1w.csv

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XHCUMS/sub-0025989/ses-1/mri/lpba40_sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/m0wp1sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/m0wp2sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/m0wp3sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/mori_sub-0025989_ses-1_run-1_T1w.csv

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XHCUMS/sub-0025989/ses-1/mri/mori_sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/mwp1sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/mwp2sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/mwp3sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/neuromorphometrics_sub-0025989_ses-1_run-1_T1w.csv

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XHCUMS/sub-0025989/ses-1/mri/neuromorphometrics_sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/p0sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/p1sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/p2sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/p3sub-0025989_ses-1_run-1_T1w.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/rp1sub-0025989_ses-1_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/rp2sub-0025989_ses-1_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025989/ses-1/mri/t_sub-0025989_ses-1_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025989/ses-1/mri/t_sub-0025989_ses-1_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025989/ses-1/mri/thalamus_sub-0025989_ses-1_run-1_T1w.csv

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