[DATALAD RUNCMD] Compute BMB_1/sub-0003052/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003052/ses-1/anat/sub-0003052_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003052/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003052/ses-1/label/catROI_sub-0003052_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/XP/MD5E-s61302--21013a80e8f79e6550ee847339d90179.mat/MD5E-s61302--21013a80e8f79e6550ee847339d90179.mat

BMB_1/sub-0003052/ses-1/label/catROI_sub-0003052_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/7z/MD5E-s189294--2381f68f0de8782fefb5c3ee71840ba9.xml/MD5E-s189294--2381f68f0de8782fefb5c3ee71840ba9.xml

BMB_1/sub-0003052/ses-1/label/catROIs_sub-0003052_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/Xp/MD5E-s119957--09ffc0c00c918cef1ea3a968bb47dc1c.mat/MD5E-s119957--09ffc0c00c918cef1ea3a968bb47dc1c.mat

BMB_1/sub-0003052/ses-1/label/catROIs_sub-0003052_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/wZ/MD5E-s332052--04e36fcbd3e0f9594efcffd8a1169836.xml/MD5E-s332052--04e36fcbd3e0f9594efcffd8a1169836.xml

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/gV/MD5E-s152031--6d319397f70855701ef75340ad8284ff.nii.gz/MD5E-s152031--6d319397f70855701ef75340ad8284ff.nii.gz

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m9/j9/MD5E-s169845--8f1564c65b590a80dc3d0accc1bfca60.nii.gz/MD5E-s169845--8f1564c65b590a80dc3d0accc1bfca60.nii.gz

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/GJ/MD5E-s231597--50350d8340d9b3639d740f0bbf449fc7.nii.gz/MD5E-s231597--50350d8340d9b3639d740f0bbf449fc7.nii.gz

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003052/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/qk/MD5E-s256440--862dbbeb6e2c1859aabc6baf365f40a6.nii.gz/MD5E-s256440--862dbbeb6e2c1859aabc6baf365f40a6.nii.gz

BMB_1/sub-0003052/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003052/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/87/MD5E-s23169--4d4e39b266ead0cd625a0b42562633d0.nii.gz/MD5E-s23169--4d4e39b266ead0cd625a0b42562633d0.nii.gz

BMB_1/sub-0003052/ses-1/mri/aal3_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003052/ses-1/mri/aal3_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/9m/MD5E-s172753--e9af936f5cb91f50294f171c3fd29431.nii.gz/MD5E-s172753--e9af936f5cb91f50294f171c3fd29431.nii.gz

BMB_1/sub-0003052/ses-1/mri/anatomy3_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003052/ses-1/mri/anatomy3_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/p7/MD5E-s124623--6d592cb262db384488380175defa5360.nii.gz/MD5E-s124623--6d592cb262db384488380175defa5360.nii.gz

BMB_1/sub-0003052/ses-1/mri/anon_misub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/Zk/MD5E-s5274844--61127052312a684b67ae8b09f87a857e.nii.gz/MD5E-s5274844--61127052312a684b67ae8b09f87a857e.nii.gz

BMB_1/sub-0003052/ses-1/mri/anon_msub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/KK/MD5E-s12594286--b55eac088ae02a49599aea99807126b5.nii.gz/MD5E-s12594286--b55eac088ae02a49599aea99807126b5.nii.gz

BMB_1/sub-0003052/ses-1/mri/cat_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/zJ/MD5E-s93065--c6ed6a343d157aad450b8c9f54d7f9b2.nii.gz/MD5E-s93065--c6ed6a343d157aad450b8c9f54d7f9b2.nii.gz

BMB_1/sub-0003052/ses-1/mri/cobra_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003052/ses-1/mri/cobra_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/3g/MD5E-s45519--460b7a3310e72dd0129e1479bf2af48e.nii.gz/MD5E-s45519--460b7a3310e72dd0129e1479bf2af48e.nii.gz

BMB_1/sub-0003052/ses-1/mri/hammers_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003052/ses-1/mri/hammers_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/x0/MD5E-s134381--6901dda63923965534d04c39d6aa5e69.nii.gz/MD5E-s134381--6901dda63923965534d04c39d6aa5e69.nii.gz

BMB_1/sub-0003052/ses-1/mri/ibsr_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003052/ses-1/mri/ibsr_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/kF/MD5E-s143214--aa14f6e66823c9ac5d16dbe588021152.nii.gz/MD5E-s143214--aa14f6e66823c9ac5d16dbe588021152.nii.gz

BMB_1/sub-0003052/ses-1/mri/it_sub-0003052_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/9p/MD5E-s282--3e14c639a1cf00b268fa2a355af20e8a.mat/MD5E-s282--3e14c639a1cf00b268fa2a355af20e8a.mat

BMB_1/sub-0003052/ses-1/mri/it_sub-0003052_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/Fm/MD5E-s283--08099e9e3feec0175919e133856b35e1.mat/MD5E-s283--08099e9e3feec0175919e133856b35e1.mat

BMB_1/sub-0003052/ses-1/mri/iy_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/m6/MD5E-s42190659--fdc028c17e064659a81588871a942d0a.nii.gz/MD5E-s42190659--fdc028c17e064659a81588871a942d0a.nii.gz

BMB_1/sub-0003052/ses-1/mri/julichbrain_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003052/ses-1/mri/julichbrain_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/V8/MD5E-s181228--fbfe74f4bcbb03f004f3a74a5c261ff2.nii.gz/MD5E-s181228--fbfe74f4bcbb03f004f3a74a5c261ff2.nii.gz

BMB_1/sub-0003052/ses-1/mri/lpba40_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003052/ses-1/mri/lpba40_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XK/FV/MD5E-s133292--fbd983b3239870e8976128c4923813ad.nii.gz/MD5E-s133292--fbd983b3239870e8976128c4923813ad.nii.gz

BMB_1/sub-0003052/ses-1/mri/m0wp1sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/z4/MD5E-s2579326--d64de782f1fb2410734ff5280d20d9a7.nii.gz/MD5E-s2579326--d64de782f1fb2410734ff5280d20d9a7.nii.gz

BMB_1/sub-0003052/ses-1/mri/m0wp2sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/mP/MD5E-s2293469--5c85d38349f131e7b22c574fb85c5f86.nii.gz/MD5E-s2293469--5c85d38349f131e7b22c574fb85c5f86.nii.gz

BMB_1/sub-0003052/ses-1/mri/m0wp3sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/zm/MD5E-s2502009--1fb67fabea841bf5fb085f4de87304e4.nii.gz/MD5E-s2502009--1fb67fabea841bf5fb085f4de87304e4.nii.gz

BMB_1/sub-0003052/ses-1/mri/mori_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003052/ses-1/mri/mori_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pg/zK/MD5E-s158765--616c00379510afb56dec2bfda55ba961.nii.gz/MD5E-s158765--616c00379510afb56dec2bfda55ba961.nii.gz

BMB_1/sub-0003052/ses-1/mri/mwp1sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/5Z/MD5E-s2589150--44dcdd30dbb81cb946524ea9dd4cd38d.nii.gz/MD5E-s2589150--44dcdd30dbb81cb946524ea9dd4cd38d.nii.gz

BMB_1/sub-0003052/ses-1/mri/mwp2sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/kx/MD5E-s2297055--7c87678c1b76d66843f8075ba5501841.nii.gz/MD5E-s2297055--7c87678c1b76d66843f8075ba5501841.nii.gz

BMB_1/sub-0003052/ses-1/mri/mwp3sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/50/MD5E-s2501311--b3822b230955d74d985e86fb8615e98c.nii.gz/MD5E-s2501311--b3822b230955d74d985e86fb8615e98c.nii.gz

BMB_1/sub-0003052/ses-1/mri/neuromorphometrics_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003052/ses-1/mri/neuromorphometrics_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/3X/MD5E-s182970--0e4f862111e19e2d805803736207e09f.nii.gz/MD5E-s182970--0e4f862111e19e2d805803736207e09f.nii.gz

BMB_1/sub-0003052/ses-1/mri/p0sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/49/MD5E-s571875--7e0254e9d59b8d0520c5e85720129bda.nii.gz/MD5E-s571875--7e0254e9d59b8d0520c5e85720129bda.nii.gz

BMB_1/sub-0003052/ses-1/mri/p1sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/vP/MD5E-s606588--9712c5657d8651102d308235be6ec5d5.nii.gz/MD5E-s606588--9712c5657d8651102d308235be6ec5d5.nii.gz

BMB_1/sub-0003052/ses-1/mri/p2sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/gp/MD5E-s396052--2f406f685dac9e2648d23c3309ea73f5.nii.gz/MD5E-s396052--2f406f685dac9e2648d23c3309ea73f5.nii.gz

BMB_1/sub-0003052/ses-1/mri/p3sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9j/vV/MD5E-s346025--bd59f6a36b7c77a1e03a1d89daa3c4d3.nii.gz/MD5E-s346025--bd59f6a36b7c77a1e03a1d89daa3c4d3.nii.gz

BMB_1/sub-0003052/ses-1/mri/rp1sub-0003052_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/XG/MD5E-s438752--a071ae39445c56962925181721818427.nii.gz/MD5E-s438752--a071ae39445c56962925181721818427.nii.gz

BMB_1/sub-0003052/ses-1/mri/rp2sub-0003052_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zw/12/MD5E-s298168--f467261618b98e2d224d753407a0ae2f.nii.gz/MD5E-s298168--f467261618b98e2d224d753407a0ae2f.nii.gz

BMB_1/sub-0003052/ses-1/mri/rp3sub-0003052_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003052/ses-1/mri/t_sub-0003052_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/W6/MD5E-s284--648402c92578c95cc78cb5428db7129f.mat/MD5E-s284--648402c92578c95cc78cb5428db7129f.mat

BMB_1/sub-0003052/ses-1/mri/t_sub-0003052_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gW/Gk/MD5E-s284--6a12bed8959da8cdd04f75fc131378a8.mat/MD5E-s284--6a12bed8959da8cdd04f75fc131378a8.mat

BMB_1/sub-0003052/ses-1/mri/thalamus_sub-0003052_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003052/ses-1/mri/thalamus_sub-0003052_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/PW/MD5E-s15895--8540aab7556dae4697e4277062d7ee7b.nii.gz/MD5E-s15895--8540aab7556dae4697e4277062d7ee7b.nii.gz

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