[DATALAD RUNCMD] Compute BMB_1/sub-0003026/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003026/ses-1/anat/sub-0003026_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003026/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003026/ses-1/label/catROI_sub-0003026_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/2W/MD5E-s57978--6e22ea4d5ed10f0de5a1e6bc6131af74.mat/MD5E-s57978--6e22ea4d5ed10f0de5a1e6bc6131af74.mat

BMB_1/sub-0003026/ses-1/label/catROI_sub-0003026_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/V0/MD5E-s188899--a5c2f848a3e0b23be4956b9d6599f8af.xml/MD5E-s188899--a5c2f848a3e0b23be4956b9d6599f8af.xml

BMB_1/sub-0003026/ses-1/label/catROIs_sub-0003026_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/3j/MD5E-s120070--fa5aef351d26452b115757f88ac27ad0.mat/MD5E-s120070--fa5aef351d26452b115757f88ac27ad0.mat

BMB_1/sub-0003026/ses-1/label/catROIs_sub-0003026_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/7z/MD5E-s332068--de2f1cd94cc74dd44e9082998a9d8278.xml/MD5E-s332068--de2f1cd94cc74dd44e9082998a9d8278.xml

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/X8/MD5E-s160399--c43cd047f9a33f36803be5cea799d49f.nii.gz/MD5E-s160399--c43cd047f9a33f36803be5cea799d49f.nii.gz

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/89/MD5E-s177985--170de4232e0a852c788eba1628effc66.nii.gz/MD5E-s177985--170de4232e0a852c788eba1628effc66.nii.gz

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/M1/MD5E-s243252--a823018216e0774f650c64ec9c4ae527.nii.gz/MD5E-s243252--a823018216e0774f650c64ec9c4ae527.nii.gz

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003026/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/5F/MD5E-s269156--2922f5337a346c489b823623957c96aa.nii.gz/MD5E-s269156--2922f5337a346c489b823623957c96aa.nii.gz

BMB_1/sub-0003026/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003026/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/MZ/MD5E-s23318--5203a1dcf763b1f6bd17135edbed6652.nii.gz/MD5E-s23318--5203a1dcf763b1f6bd17135edbed6652.nii.gz

BMB_1/sub-0003026/ses-1/mri/aal3_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003026/ses-1/mri/aal3_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/ff/MD5E-s178724--1cdaa0ef7045bded785902b517ee26b8.nii.gz/MD5E-s178724--1cdaa0ef7045bded785902b517ee26b8.nii.gz

BMB_1/sub-0003026/ses-1/mri/anatomy3_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003026/ses-1/mri/anatomy3_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WQ/gm/MD5E-s132362--c211781b08fef46432f8750048ace25d.nii.gz/MD5E-s132362--c211781b08fef46432f8750048ace25d.nii.gz

BMB_1/sub-0003026/ses-1/mri/anon_misub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/k4/MD5E-s5263706--7ddf1533e1c5b4639c72fd9c8defc69f.nii.gz/MD5E-s5263706--7ddf1533e1c5b4639c72fd9c8defc69f.nii.gz

BMB_1/sub-0003026/ses-1/mri/anon_msub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/Wk/MD5E-s12859554--cc930f1544ef1f8979bb5544766abf47.nii.gz/MD5E-s12859554--cc930f1544ef1f8979bb5544766abf47.nii.gz

BMB_1/sub-0003026/ses-1/mri/cat_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/9f/MD5E-s95543--f3518b8799a5a1bb93b164b9d5dace35.nii.gz/MD5E-s95543--f3518b8799a5a1bb93b164b9d5dace35.nii.gz

BMB_1/sub-0003026/ses-1/mri/cobra_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003026/ses-1/mri/cobra_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/v9/MD5E-s45572--93d72874c842a889a3a43f9853af2905.nii.gz/MD5E-s45572--93d72874c842a889a3a43f9853af2905.nii.gz

BMB_1/sub-0003026/ses-1/mri/hammers_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003026/ses-1/mri/hammers_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fv/xf/MD5E-s141250--1752ca0114ba27e0a9c1c0697d3aef36.nii.gz/MD5E-s141250--1752ca0114ba27e0a9c1c0697d3aef36.nii.gz

BMB_1/sub-0003026/ses-1/mri/ibsr_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003026/ses-1/mri/ibsr_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/19/MD5E-s149445--0afd5e3d67e63d3322ac46e035e194a8.nii.gz/MD5E-s149445--0afd5e3d67e63d3322ac46e035e194a8.nii.gz

BMB_1/sub-0003026/ses-1/mri/it_sub-0003026_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xW/q1/MD5E-s282--50b589a4a0deed3c2f4784f515413322.mat/MD5E-s282--50b589a4a0deed3c2f4784f515413322.mat

BMB_1/sub-0003026/ses-1/mri/it_sub-0003026_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1p/zf/MD5E-s282--36b492c2c62dfe5504a9b386b9ede2e5.mat/MD5E-s282--36b492c2c62dfe5504a9b386b9ede2e5.mat

BMB_1/sub-0003026/ses-1/mri/iy_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/Kk/MD5E-s42810395--a618e4a21dda5c7980b4a028fa390186.nii.gz/MD5E-s42810395--a618e4a21dda5c7980b4a028fa390186.nii.gz

BMB_1/sub-0003026/ses-1/mri/julichbrain_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003026/ses-1/mri/julichbrain_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/52/44/MD5E-s191685--88fd23eecbf3562c0a835b0df97140c6.nii.gz/MD5E-s191685--88fd23eecbf3562c0a835b0df97140c6.nii.gz

BMB_1/sub-0003026/ses-1/mri/lpba40_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003026/ses-1/mri/lpba40_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/Wk/MD5E-s139949--1c99672a7d16bb318f93f8f7b196a09b.nii.gz/MD5E-s139949--1c99672a7d16bb318f93f8f7b196a09b.nii.gz

BMB_1/sub-0003026/ses-1/mri/m0wp1sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/1k/MD5E-s2582035--be1e51b20961b34cdf5bc8ac8eb5e600.nii.gz/MD5E-s2582035--be1e51b20961b34cdf5bc8ac8eb5e600.nii.gz

BMB_1/sub-0003026/ses-1/mri/m0wp2sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/x1/MD5E-s2285572--03a0c8207a145f89d681ccd0dc22c085.nii.gz/MD5E-s2285572--03a0c8207a145f89d681ccd0dc22c085.nii.gz

BMB_1/sub-0003026/ses-1/mri/m0wp3sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/fq/MD5E-s2488828--c1c78c1842671483aa3ec81a5e7963ba.nii.gz/MD5E-s2488828--c1c78c1842671483aa3ec81a5e7963ba.nii.gz

BMB_1/sub-0003026/ses-1/mri/mori_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003026/ses-1/mri/mori_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/WF/MD5E-s166006--c2a2e3d358e77b2fecf7f5ab1183ceef.nii.gz/MD5E-s166006--c2a2e3d358e77b2fecf7f5ab1183ceef.nii.gz

BMB_1/sub-0003026/ses-1/mri/mwp1sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/Jv/MD5E-s2588021--dfba1371cfd39f78684968366ea4586c.nii.gz/MD5E-s2588021--dfba1371cfd39f78684968366ea4586c.nii.gz

BMB_1/sub-0003026/ses-1/mri/mwp2sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/96/MD5E-s2283760--d1f89994ab4c7776f5d0f3979075b268.nii.gz/MD5E-s2283760--d1f89994ab4c7776f5d0f3979075b268.nii.gz

BMB_1/sub-0003026/ses-1/mri/mwp3sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/3V/MD5E-s2485838--dfe88b42b778f0ad424fa593d19b85b5.nii.gz/MD5E-s2485838--dfe88b42b778f0ad424fa593d19b85b5.nii.gz

BMB_1/sub-0003026/ses-1/mri/neuromorphometrics_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003026/ses-1/mri/neuromorphometrics_sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/z7/MD5E-s192472--08fd81f618a24f529e39fa1c581599d0.nii.gz/MD5E-s192472--08fd81f618a24f529e39fa1c581599d0.nii.gz

BMB_1/sub-0003026/ses-1/mri/p0sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/15/MD5E-s586536--aaaaa6e4277c73feddc8afe5e6afbf6d.nii.gz/MD5E-s586536--aaaaa6e4277c73feddc8afe5e6afbf6d.nii.gz

BMB_1/sub-0003026/ses-1/mri/p1sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/m9/MD5E-s621635--aa535f60e3bde2755b052f167407757c.nii.gz/MD5E-s621635--aa535f60e3bde2755b052f167407757c.nii.gz

BMB_1/sub-0003026/ses-1/mri/p2sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9J/wV/MD5E-s407326--1b626812dbdf27efc552f9956ebeb04f.nii.gz/MD5E-s407326--1b626812dbdf27efc552f9956ebeb04f.nii.gz

BMB_1/sub-0003026/ses-1/mri/p3sub-0003026_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003026/ses-1/mri/rp1sub-0003026_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003026/ses-1/mri/rp2sub-0003026_ses-1_run-1_T1w_affine.nii.gz

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+../../../../.git/annex/objects/3j/k9/MD5E-s299445--41e33384a2f838731bd32a9cc48b437b.nii.gz/MD5E-s299445--41e33384a2f838731bd32a9cc48b437b.nii.gz

BMB_1/sub-0003026/ses-1/mri/rp3sub-0003026_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003026/ses-1/mri/t_sub-0003026_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/46/MD5E-s284--9e4a1f21ffbb4e36b2403f0d1d8e5995.mat/MD5E-s284--9e4a1f21ffbb4e36b2403f0d1d8e5995.mat

BMB_1/sub-0003026/ses-1/mri/t_sub-0003026_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/qp/MD5E-s283--0c26663096d2c8f54a4177c46dfc8c38.mat/MD5E-s283--0c26663096d2c8f54a4177c46dfc8c38.mat

BMB_1/sub-0003026/ses-1/mri/thalamus_sub-0003026_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003026/ses-1/mri/thalamus_sub-0003026_ses-1_run-1_T1w.nii.gz

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