[DATALAD RUNCMD] Compute Utah_2/sub-0026017/ses-4

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/Utah_2/sub-0026017/ses-4/anat/sub-0026017_ses-4_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "Utah_2/sub-0026017/ses-4"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Utah_2/sub-0026017/ses-4/label/catROI_sub-0026017_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/25/wF/MD5E-s61355--d700a010965573ff847bc917b02a5859.mat/MD5E-s61355--d700a010965573ff847bc917b02a5859.mat

Utah_2/sub-0026017/ses-4/label/catROI_sub-0026017_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gf/gP/MD5E-s188941--41e4d34c3a3b2a4221a95bf0117c0ba5.xml/MD5E-s188941--41e4d34c3a3b2a4221a95bf0117c0ba5.xml

Utah_2/sub-0026017/ses-4/label/catROIs_sub-0026017_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/23/8q/MD5E-s120175--28d4f65d1844755484b2576a0da189bd.mat/MD5E-s120175--28d4f65d1844755484b2576a0da189bd.mat

Utah_2/sub-0026017/ses-4/label/catROIs_sub-0026017_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/FF/MD5E-s332168--dea24a1010e5cae960958ba94e83dcf4.xml/MD5E-s332168--dea24a1010e5cae960958ba94e83dcf4.xml

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/XM/MD5E-s192277--3dd0e3f24478df2728dbed19ff0ac96c.nii.gz/MD5E-s192277--3dd0e3f24478df2728dbed19ff0ac96c.nii.gz

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/XZ/MD5E-s215033--fc13ef7642bd62d92fb9bd960478ee37.nii.gz/MD5E-s215033--fc13ef7642bd62d92fb9bd960478ee37.nii.gz

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/g9/MD5E-s274736--8a4191b82210f80ecb287a5afa5be5a6.nii.gz/MD5E-s274736--8a4191b82210f80ecb287a5afa5be5a6.nii.gz

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Utah_2/sub-0026017/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/Zp/MD5E-s305400--8ba9f4491d804788b000e01b25235f13.nii.gz/MD5E-s305400--8ba9f4491d804788b000e01b25235f13.nii.gz

Utah_2/sub-0026017/ses-4/mri/Tian_Subcortex_S2_7T_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Utah_2/sub-0026017/ses-4/mri/Tian_Subcortex_S2_7T_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/27/MD5E-s29756--5efc5da5560a502b42f88f1b787824b7.nii.gz/MD5E-s29756--5efc5da5560a502b42f88f1b787824b7.nii.gz

Utah_2/sub-0026017/ses-4/mri/aal3_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Utah_2/sub-0026017/ses-4/mri/aal3_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/33/MD5E-s217807--c95ed6335b3278bc6058d3b4a617999e.nii.gz/MD5E-s217807--c95ed6335b3278bc6058d3b4a617999e.nii.gz

Utah_2/sub-0026017/ses-4/mri/anatomy3_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Utah_2/sub-0026017/ses-4/mri/anatomy3_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/kq/MD5E-s154776--6dca0e021464ed2adb22def54c2714d8.nii.gz/MD5E-s154776--6dca0e021464ed2adb22def54c2714d8.nii.gz

Utah_2/sub-0026017/ses-4/mri/anon_misub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/3m/MD5E-s11326518--cfe6d9701b19fbb04eb4a0d913435c00.nii.gz/MD5E-s11326518--cfe6d9701b19fbb04eb4a0d913435c00.nii.gz

Utah_2/sub-0026017/ses-4/mri/anon_msub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/qq/MD5E-s13139146--7cf3b47996239358105b47f8abd5fc29.nii.gz/MD5E-s13139146--7cf3b47996239358105b47f8abd5fc29.nii.gz

Utah_2/sub-0026017/ses-4/mri/cat_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/jw/MD5E-s116135--28c662144555605dc2e33a66338b502d.nii.gz/MD5E-s116135--28c662144555605dc2e33a66338b502d.nii.gz

Utah_2/sub-0026017/ses-4/mri/cobra_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Utah_2/sub-0026017/ses-4/mri/cobra_sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/hammers_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Utah_2/sub-0026017/ses-4/mri/hammers_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/Pf/MD5E-s171161--0925539973a17898fca7fdbb1246353a.nii.gz/MD5E-s171161--0925539973a17898fca7fdbb1246353a.nii.gz

Utah_2/sub-0026017/ses-4/mri/ibsr_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Utah_2/sub-0026017/ses-4/mri/ibsr_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/34/MD5E-s177380--a25f496dacd3043e72b6e89b90ff77c5.nii.gz/MD5E-s177380--a25f496dacd3043e72b6e89b90ff77c5.nii.gz

Utah_2/sub-0026017/ses-4/mri/it_sub-0026017_ses-4_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/6q/MD5E-s283--ed0906770d2b54352827add910b6056e.mat/MD5E-s283--ed0906770d2b54352827add910b6056e.mat

Utah_2/sub-0026017/ses-4/mri/it_sub-0026017_ses-4_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/8X/MD5E-s283--6f0ddc924ead6e6f53328ddeabe74b1d.mat/MD5E-s283--6f0ddc924ead6e6f53328ddeabe74b1d.mat

Utah_2/sub-0026017/ses-4/mri/iy_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/Xm/MD5E-s50101095--80271738bcc4b3f8ae7cb652d5b9964f.nii.gz/MD5E-s50101095--80271738bcc4b3f8ae7cb652d5b9964f.nii.gz

Utah_2/sub-0026017/ses-4/mri/julichbrain_sub-0026017_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_2/sub-0026017/ses-4/mri/julichbrain_sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/mg/MD5E-s229659--fa7a932f98be1c8416e4652ce7cdfe6f.nii.gz/MD5E-s229659--fa7a932f98be1c8416e4652ce7cdfe6f.nii.gz

Utah_2/sub-0026017/ses-4/mri/lpba40_sub-0026017_ses-4_run-1_T1w.csv

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Utah_2/sub-0026017/ses-4/mri/lpba40_sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/m0wp1sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/m0wp2sub-0026017_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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Utah_2/sub-0026017/ses-4/mri/m0wp3sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/mori_sub-0026017_ses-4_run-1_T1w.csv

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Utah_2/sub-0026017/ses-4/mri/mori_sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/mwp1sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/mwp2sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/mwp3sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/neuromorphometrics_sub-0026017_ses-4_run-1_T1w.csv

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Utah_2/sub-0026017/ses-4/mri/neuromorphometrics_sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/p0sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/p1sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/p2sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/p3sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/rp1sub-0026017_ses-4_run-1_T1w_affine.nii.gz

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Utah_2/sub-0026017/ses-4/mri/rp2sub-0026017_ses-4_run-1_T1w_affine.nii.gz

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Utah_2/sub-0026017/ses-4/mri/rp3sub-0026017_ses-4_run-1_T1w_affine.nii.gz

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Utah_2/sub-0026017/ses-4/mri/t_sub-0026017_ses-4_run-1_T1w_affine_reorient.mat

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Utah_2/sub-0026017/ses-4/mri/t_sub-0026017_ses-4_run-1_T1w_rigid_reorient.mat

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Utah_2/sub-0026017/ses-4/mri/thalamus_sub-0026017_ses-4_run-1_T1w.csv

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Utah_2/sub-0026017/ses-4/mri/thalamus_sub-0026017_ses-4_run-1_T1w.nii.gz

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Utah_2/sub-0026017/ses-4/mri/wj_sub-0026017_ses-4_run-1_T1w.nii.gz

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