[DATALAD RUNCMD] Compute SWU_4/sub-0025675/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025675/ses-2/anat/sub-0025675_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025675/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025675/ses-2/label/catROI_sub-0025675_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/42/MD5E-s57635--49d88dd89d6d85cd051a29018f7fa600.mat/MD5E-s57635--49d88dd89d6d85cd051a29018f7fa600.mat

SWU_4/sub-0025675/ses-2/label/catROI_sub-0025675_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/3v/MD5E-s188928--7909acaac19a26e7758924ee0f94560a.xml/MD5E-s188928--7909acaac19a26e7758924ee0f94560a.xml

SWU_4/sub-0025675/ses-2/label/catROIs_sub-0025675_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/5F/MD5E-s119982--235a9d1cb4522a39bec34c7fcf209a05.mat/MD5E-s119982--235a9d1cb4522a39bec34c7fcf209a05.mat

SWU_4/sub-0025675/ses-2/label/catROIs_sub-0025675_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/MP/MD5E-s332136--c2ebd88a6653c15af8aecb33852bb49f.xml/MD5E-s332136--c2ebd88a6653c15af8aecb33852bb49f.xml

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/jJ/MD5E-s146293--06434671b46e1b69fa2181de9ab69cf3.nii.gz/MD5E-s146293--06434671b46e1b69fa2181de9ab69cf3.nii.gz

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/PF/MD5E-s166075--6038034569320a04c368106e0adb78ff.nii.gz/MD5E-s166075--6038034569320a04c368106e0adb78ff.nii.gz

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/KP/MD5E-s221957--71bd1cb690e1d804df6465558421a6a5.nii.gz/MD5E-s221957--71bd1cb690e1d804df6465558421a6a5.nii.gz

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025675/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/jz/MD5E-s247159--188407ded74a3e9ce51dc44c37b189b3.nii.gz/MD5E-s247159--188407ded74a3e9ce51dc44c37b189b3.nii.gz

SWU_4/sub-0025675/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025675/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/zf/MD5E-s23481--4f0ebb6433f7bedd4bea3671ccc59295.nii.gz/MD5E-s23481--4f0ebb6433f7bedd4bea3671ccc59295.nii.gz

SWU_4/sub-0025675/ses-2/mri/aal3_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025675/ses-2/mri/aal3_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Q/W5/MD5E-s168174--6a54b6af833877260445a48fcd26d507.nii.gz/MD5E-s168174--6a54b6af833877260445a48fcd26d507.nii.gz

SWU_4/sub-0025675/ses-2/mri/anatomy3_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025675/ses-2/mri/anatomy3_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/8F/MD5E-s122531--d741558de89baa480e3794939b1cf307.nii.gz/MD5E-s122531--d741558de89baa480e3794939b1cf307.nii.gz

SWU_4/sub-0025675/ses-2/mri/anon_misub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kz/17/MD5E-s8522872--4ccc2a80fffb07e4cfdd3466b4747dbe.nii.gz/MD5E-s8522872--4ccc2a80fffb07e4cfdd3466b4747dbe.nii.gz

SWU_4/sub-0025675/ses-2/mri/anon_msub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gx/PP/MD5E-s8713619--9b5478fd2d0f6765bba3a3f906461ccf.nii.gz/MD5E-s8713619--9b5478fd2d0f6765bba3a3f906461ccf.nii.gz

SWU_4/sub-0025675/ses-2/mri/cat_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/XZ/MD5E-s91007--324594789bd220d697852cda48402e93.nii.gz/MD5E-s91007--324594789bd220d697852cda48402e93.nii.gz

SWU_4/sub-0025675/ses-2/mri/cobra_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025675/ses-2/mri/cobra_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/WG/MD5E-s45415--f9095ff9e03275f4e8489897a0c7476c.nii.gz/MD5E-s45415--f9095ff9e03275f4e8489897a0c7476c.nii.gz

SWU_4/sub-0025675/ses-2/mri/hammers_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025675/ses-2/mri/hammers_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/gv/MD5E-s132966--5623a487cd1653490b6c625292369e01.nii.gz/MD5E-s132966--5623a487cd1653490b6c625292369e01.nii.gz

SWU_4/sub-0025675/ses-2/mri/ibsr_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025675/ses-2/mri/ibsr_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/Q3/MD5E-s139953--e2a15cabdd7b91702decff8daabb531d.nii.gz/MD5E-s139953--e2a15cabdd7b91702decff8daabb531d.nii.gz

SWU_4/sub-0025675/ses-2/mri/it_sub-0025675_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jw/1W/MD5E-s283--8051c13153974e59c50414d37c7f635f.mat/MD5E-s283--8051c13153974e59c50414d37c7f635f.mat

SWU_4/sub-0025675/ses-2/mri/it_sub-0025675_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/Fx/MD5E-s283--4d279823735fea5535b9f1a659937554.mat/MD5E-s283--4d279823735fea5535b9f1a659937554.mat

SWU_4/sub-0025675/ses-2/mri/iy_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/FK/MD5E-s39898254--3657c6eaa3e257f3e62cbe9d0a93f670.nii.gz/MD5E-s39898254--3657c6eaa3e257f3e62cbe9d0a93f670.nii.gz

SWU_4/sub-0025675/ses-2/mri/julichbrain_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025675/ses-2/mri/julichbrain_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/wJ/MD5E-s177929--0f943fb5078247032cbd93fbba1ec67b.nii.gz/MD5E-s177929--0f943fb5078247032cbd93fbba1ec67b.nii.gz

SWU_4/sub-0025675/ses-2/mri/lpba40_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025675/ses-2/mri/lpba40_sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/m0wp1sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/Fp/MD5E-s2574223--eaf2422be77ef998e6d34ac88b6eae78.nii.gz/MD5E-s2574223--eaf2422be77ef998e6d34ac88b6eae78.nii.gz

SWU_4/sub-0025675/ses-2/mri/m0wp2sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/zz/MD5E-s2299212--3daa6624e1c0a6a04c4c2e38e14c1a2e.nii.gz/MD5E-s2299212--3daa6624e1c0a6a04c4c2e38e14c1a2e.nii.gz

SWU_4/sub-0025675/ses-2/mri/m0wp3sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/M9/MD5E-s2529233--9159ec3967f0b2eac69db9a20f0732d3.nii.gz/MD5E-s2529233--9159ec3967f0b2eac69db9a20f0732d3.nii.gz

SWU_4/sub-0025675/ses-2/mri/mori_sub-0025675_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025675/ses-2/mri/mori_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/Mm/MD5E-s153906--117b9d5fb16aca06814943e29c40ad47.nii.gz/MD5E-s153906--117b9d5fb16aca06814943e29c40ad47.nii.gz

SWU_4/sub-0025675/ses-2/mri/mwp1sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/mwp2sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/mwp3sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/neuromorphometrics_sub-0025675_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025675/ses-2/mri/neuromorphometrics_sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/p0sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/p1sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/p2sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/p3sub-0025675_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025675/ses-2/mri/rp1sub-0025675_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025675/ses-2/mri/rp2sub-0025675_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025675/ses-2/mri/rp3sub-0025675_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025675/ses-2/mri/t_sub-0025675_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025675/ses-2/mri/t_sub-0025675_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025675/ses-2/mri/thalamus_sub-0025675_ses-2_run-1_T1w.csv

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SWU_4/sub-0025675/ses-2/mri/thalamus_sub-0025675_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025675/ses-2/mri/wj_sub-0025675_ses-2_run-1_T1w.nii.gz

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