[DATALAD RUNCMD] Compute BMB_1/sub-0003034/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003034/ses-1/anat/sub-0003034_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003034/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003034/ses-1/label/catROI_sub-0003034_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/PJ/MD5E-s61376--41837cba61718e5c4dcc4548db8c192d.mat/MD5E-s61376--41837cba61718e5c4dcc4548db8c192d.mat

BMB_1/sub-0003034/ses-1/label/catROI_sub-0003034_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/fQ/MD5E-s189432--54b851f66b9b976d5ce78669e448d327.xml/MD5E-s189432--54b851f66b9b976d5ce78669e448d327.xml

BMB_1/sub-0003034/ses-1/label/catROIs_sub-0003034_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1p/Gv/MD5E-s120122--d5b2bfb5d0e0a9a1b70581bc597c87db.mat/MD5E-s120122--d5b2bfb5d0e0a9a1b70581bc597c87db.mat

BMB_1/sub-0003034/ses-1/label/catROIs_sub-0003034_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q0/Z6/MD5E-s332082--fecb1d69462ae192b643520564920a64.xml/MD5E-s332082--fecb1d69462ae192b643520564920a64.xml

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/pf/MD5E-s168977--996b63b9fd968a681c1a3f1dcf201908.nii.gz/MD5E-s168977--996b63b9fd968a681c1a3f1dcf201908.nii.gz

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/14/Gz/MD5E-s188458--a8b15d4be8d88d44d2e4091260199291.nii.gz/MD5E-s188458--a8b15d4be8d88d44d2e4091260199291.nii.gz

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/2G/MD5E-s251844--40a59312eb0f9ba4afff3e9382191b51.nii.gz/MD5E-s251844--40a59312eb0f9ba4afff3e9382191b51.nii.gz

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003034/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/k1/MD5E-s279858--d816b0a61eaefdce9cf38a940d62faac.nii.gz/MD5E-s279858--d816b0a61eaefdce9cf38a940d62faac.nii.gz

BMB_1/sub-0003034/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003034/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/7M/MD5E-s25462--53d2e779d7abbe776e4af0bc96a01207.nii.gz/MD5E-s25462--53d2e779d7abbe776e4af0bc96a01207.nii.gz

BMB_1/sub-0003034/ses-1/mri/aal3_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003034/ses-1/mri/aal3_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/4J/MD5E-s189679--178319c0e72f10053ccebdac9183acfa.nii.gz/MD5E-s189679--178319c0e72f10053ccebdac9183acfa.nii.gz

BMB_1/sub-0003034/ses-1/mri/anatomy3_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003034/ses-1/mri/anatomy3_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/KJ/MD5E-s139440--1575855c95d0b00ef8e5ddd071fd8c7c.nii.gz/MD5E-s139440--1575855c95d0b00ef8e5ddd071fd8c7c.nii.gz

BMB_1/sub-0003034/ses-1/mri/anon_misub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/5g/MD5E-s10380442--f6e835b2809fa119b5a7d140f4afa362.nii.gz/MD5E-s10380442--f6e835b2809fa119b5a7d140f4afa362.nii.gz

BMB_1/sub-0003034/ses-1/mri/anon_msub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/W5/MD5E-s11235823--bfc8747fa9724e7c65758e3650ea5aa1.nii.gz/MD5E-s11235823--bfc8747fa9724e7c65758e3650ea5aa1.nii.gz

BMB_1/sub-0003034/ses-1/mri/cat_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/6K/MD5E-s105585--0e2968cb11ade20d9eea5d6cdf1a7f20.nii.gz/MD5E-s105585--0e2968cb11ade20d9eea5d6cdf1a7f20.nii.gz

BMB_1/sub-0003034/ses-1/mri/cobra_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003034/ses-1/mri/cobra_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gf/7f/MD5E-s50724--1535a90f4894f8e39b13829a230be5c9.nii.gz/MD5E-s50724--1535a90f4894f8e39b13829a230be5c9.nii.gz

BMB_1/sub-0003034/ses-1/mri/hammers_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003034/ses-1/mri/hammers_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/7x/MD5E-s150207--79235c624bf0c9d2660a38c10c0622c1.nii.gz/MD5E-s150207--79235c624bf0c9d2660a38c10c0622c1.nii.gz

BMB_1/sub-0003034/ses-1/mri/ibsr_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003034/ses-1/mri/ibsr_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/XQ/MD5E-s157443--a23d88bf5c0657d6a51b5f0b1e10d8aa.nii.gz/MD5E-s157443--a23d88bf5c0657d6a51b5f0b1e10d8aa.nii.gz

BMB_1/sub-0003034/ses-1/mri/it_sub-0003034_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/J1/MD5E-s281--0441ec374351bb9ae32dffc13f9c9432.mat/MD5E-s281--0441ec374351bb9ae32dffc13f9c9432.mat

BMB_1/sub-0003034/ses-1/mri/it_sub-0003034_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/Jf/MD5E-s283--368bf7b0ebf67d059d2736ff1428e3a3.mat/MD5E-s283--368bf7b0ebf67d059d2736ff1428e3a3.mat

BMB_1/sub-0003034/ses-1/mri/iy_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/gF/MD5E-s44055748--91cae26182d31dd0a689f4625468b078.nii.gz/MD5E-s44055748--91cae26182d31dd0a689f4625468b078.nii.gz

BMB_1/sub-0003034/ses-1/mri/julichbrain_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003034/ses-1/mri/julichbrain_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/Vv/MD5E-s201058--9c371150a29c34dcde92f54007e4e308.nii.gz/MD5E-s201058--9c371150a29c34dcde92f54007e4e308.nii.gz

BMB_1/sub-0003034/ses-1/mri/lpba40_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003034/ses-1/mri/lpba40_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/5P/MD5E-s146810--83414438b6ea00303e91c21455e79035.nii.gz/MD5E-s146810--83414438b6ea00303e91c21455e79035.nii.gz

BMB_1/sub-0003034/ses-1/mri/m0wp1sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/z2/MD5E-s2601239--424a9a828c98cc26608d8e6bf73cf67e.nii.gz/MD5E-s2601239--424a9a828c98cc26608d8e6bf73cf67e.nii.gz

BMB_1/sub-0003034/ses-1/mri/m0wp2sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/Pz/MD5E-s2328059--f28753dffd897add63ca757c279092d1.nii.gz/MD5E-s2328059--f28753dffd897add63ca757c279092d1.nii.gz

BMB_1/sub-0003034/ses-1/mri/m0wp3sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/v6/MD5E-s2671549--651914623239c796be047562987b2ac5.nii.gz/MD5E-s2671549--651914623239c796be047562987b2ac5.nii.gz

BMB_1/sub-0003034/ses-1/mri/mori_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003034/ses-1/mri/mori_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/Kj/MD5E-s175493--500c5bcde1280463fb1910d19a88f4bf.nii.gz/MD5E-s175493--500c5bcde1280463fb1910d19a88f4bf.nii.gz

BMB_1/sub-0003034/ses-1/mri/mwp1sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/8v/MD5E-s2607270--9772747c447ef04d2f57dd428c10d26d.nii.gz/MD5E-s2607270--9772747c447ef04d2f57dd428c10d26d.nii.gz

BMB_1/sub-0003034/ses-1/mri/mwp2sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/XW/MD5E-s2334323--27f6fa6b6f754eda8e10ab1bb3ec1ea1.nii.gz/MD5E-s2334323--27f6fa6b6f754eda8e10ab1bb3ec1ea1.nii.gz

BMB_1/sub-0003034/ses-1/mri/mwp3sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/zZ/MD5E-s2670481--f7f59b707127b5f26b5aaa159eb17cb6.nii.gz/MD5E-s2670481--f7f59b707127b5f26b5aaa159eb17cb6.nii.gz

BMB_1/sub-0003034/ses-1/mri/neuromorphometrics_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003034/ses-1/mri/neuromorphometrics_sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/5q/MD5E-s202777--09327da06ff70d518fd7dc1536ab119d.nii.gz/MD5E-s202777--09327da06ff70d518fd7dc1536ab119d.nii.gz

BMB_1/sub-0003034/ses-1/mri/p0sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/8W/MD5E-s637621--084b93791cff919e315fe7ed96658eac.nii.gz/MD5E-s637621--084b93791cff919e315fe7ed96658eac.nii.gz

BMB_1/sub-0003034/ses-1/mri/p1sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/fk/MD5E-s671138--61e7b031d94989a1d7aa4f476a9b3180.nii.gz/MD5E-s671138--61e7b031d94989a1d7aa4f476a9b3180.nii.gz

BMB_1/sub-0003034/ses-1/mri/p2sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/xF/MD5E-s434748--3e3cfc0c43c1875101e8c6f15c0a3d01.nii.gz/MD5E-s434748--3e3cfc0c43c1875101e8c6f15c0a3d01.nii.gz

BMB_1/sub-0003034/ses-1/mri/p3sub-0003034_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/82/MD5E-s408316--ad66ca74dc9e5aafe81efb4798a820d0.nii.gz/MD5E-s408316--ad66ca74dc9e5aafe81efb4798a820d0.nii.gz

BMB_1/sub-0003034/ses-1/mri/rp1sub-0003034_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vJ/Gw/MD5E-s456319--d8e3084b1d606e71ea3c771407c549cd.nii.gz/MD5E-s456319--d8e3084b1d606e71ea3c771407c549cd.nii.gz

BMB_1/sub-0003034/ses-1/mri/rp2sub-0003034_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6q/WP/MD5E-s308276--12a6262ba41046e5a34fc7cfe81cb54d.nii.gz/MD5E-s308276--12a6262ba41046e5a34fc7cfe81cb54d.nii.gz

BMB_1/sub-0003034/ses-1/mri/rp3sub-0003034_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003034/ses-1/mri/t_sub-0003034_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/GQ/MD5E-s283--59506d4b2245d3479d109e632d5a0f77.mat/MD5E-s283--59506d4b2245d3479d109e632d5a0f77.mat

BMB_1/sub-0003034/ses-1/mri/t_sub-0003034_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/j9/MD5E-s283--b4546c3bf4ebfe52e65d3adfabd68a42.mat/MD5E-s283--b4546c3bf4ebfe52e65d3adfabd68a42.mat

BMB_1/sub-0003034/ses-1/mri/thalamus_sub-0003034_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003034/ses-1/mri/thalamus_sub-0003034_ses-1_run-1_T1w.nii.gz

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