[DATALAD RUNCMD] Compute MPG_1/sub-0027447/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MPG_1/sub-0027447/ses-1/anat/sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MPG_1/sub-0027447/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MPG_1/sub-0027447/ses-1/label/catROI_sub-0027447_ses-1_acq-inv1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/J6/MD5E-s61549--0193f3ff168511d6d91c6507d0fc49da.mat/MD5E-s61549--0193f3ff168511d6d91c6507d0fc49da.mat

MPG_1/sub-0027447/ses-1/label/catROI_sub-0027447_ses-1_acq-inv1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/4G/MD5E-s189956--9eae3c002beb790f7c17ec9dfa8f27ac.xml/MD5E-s189956--9eae3c002beb790f7c17ec9dfa8f27ac.xml

MPG_1/sub-0027447/ses-1/label/catROI_sub-0027447_ses-1_acq-inv2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pw/mx/MD5E-s61193--b2db55b2425dedd8c2dde2b7686fe076.mat/MD5E-s61193--b2db55b2425dedd8c2dde2b7686fe076.mat

MPG_1/sub-0027447/ses-1/label/catROI_sub-0027447_ses-1_acq-inv2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J6/xk/MD5E-s188692--795760620187c6f9313799f1a3a73c6a.xml/MD5E-s188692--795760620187c6f9313799f1a3a73c6a.xml

MPG_1/sub-0027447/ses-1/label/catROIs_sub-0027447_ses-1_acq-inv1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/5p/MD5E-s120432--b78bed4bcffdbc87e5949ac2f2cddfc8.mat/MD5E-s120432--b78bed4bcffdbc87e5949ac2f2cddfc8.mat

MPG_1/sub-0027447/ses-1/label/catROIs_sub-0027447_ses-1_acq-inv1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/Xv/MD5E-s332124--20627966f737884ed17486470ab065c5.xml/MD5E-s332124--20627966f737884ed17486470ab065c5.xml

MPG_1/sub-0027447/ses-1/label/catROIs_sub-0027447_ses-1_acq-inv2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/V2/Q2/MD5E-s121250--dccea61894d95b930f4157f856f3a826.mat/MD5E-s121250--dccea61894d95b930f4157f856f3a826.mat

MPG_1/sub-0027447/ses-1/label/catROIs_sub-0027447_ses-1_acq-inv2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/17/qG/MD5E-s332697--1c3604ac57af1840051b08de924e1a9c.xml/MD5E-s332697--1c3604ac57af1840051b08de924e1a9c.xml

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/wG/MD5E-s348574--102a86d5728d42a218250df5fa5533aa.nii.gz/MD5E-s348574--102a86d5728d42a218250df5fa5533aa.nii.gz

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/XP/60/MD5E-s387798--e799c8e74fe61b03da00573c94b05de9.nii.gz/MD5E-s387798--e799c8e74fe61b03da00573c94b05de9.nii.gz

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/4g/MD5E-s388525--a60c795d71eadbf9da28ced4cc41854d.nii.gz/MD5E-s388525--a60c795d71eadbf9da28ced4cc41854d.nii.gz

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/52/J8/MD5E-s432812--481f2fb455e01ea8e8b057a8e89c8458.nii.gz/MD5E-s432812--481f2fb455e01ea8e8b057a8e89c8458.nii.gz

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/vG/MD5E-s501504--08b6906c222e1f88ab0d39b36d4927cb.nii.gz/MD5E-s501504--08b6906c222e1f88ab0d39b36d4927cb.nii.gz

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kF/05/MD5E-s550709--1abbac8d60aa52bce759206d08f11c57.nii.gz/MD5E-s550709--1abbac8d60aa52bce759206d08f11c57.nii.gz

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/vz/MD5E-s554625--9846232200b58855d7e0627c16c94b07.nii.gz/MD5E-s554625--9846232200b58855d7e0627c16c94b07.nii.gz

MPG_1/sub-0027447/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pz/jw/MD5E-s607330--ec824965f5789dd4d561af2199d7af70.nii.gz/MD5E-s607330--ec824965f5789dd4d561af2199d7af70.nii.gz

MPG_1/sub-0027447/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/m3/MD5E-s53519--5d071f6c239271f27ba7d4980e83cf31.nii.gz/MD5E-s53519--5d071f6c239271f27ba7d4980e83cf31.nii.gz

MPG_1/sub-0027447/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pj/W8/MD5E-s55713--a876e4b41d5e3958822f07eb560b8798.nii.gz/MD5E-s55713--a876e4b41d5e3958822f07eb560b8798.nii.gz

MPG_1/sub-0027447/ses-1/mri/aal3_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/Q4/MD5E-s392325--21255e4d42f91ce1c6abca496bee9fa8.nii.gz/MD5E-s392325--21255e4d42f91ce1c6abca496bee9fa8.nii.gz

MPG_1/sub-0027447/ses-1/mri/aal3_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xg/FV/MD5E-s431002--9ce849828ab33deb6121a06bc2972fb4.nii.gz/MD5E-s431002--9ce849828ab33deb6121a06bc2972fb4.nii.gz

MPG_1/sub-0027447/ses-1/mri/anatomy3_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/2K/MD5E-s287138--1a74c1882b34fec77da2887ae4af3b67.nii.gz/MD5E-s287138--1a74c1882b34fec77da2887ae4af3b67.nii.gz

MPG_1/sub-0027447/ses-1/mri/anatomy3_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wp/FJ/MD5E-s313250--fd84a1db2a0eb35a19cada3355d69e8c.nii.gz/MD5E-s313250--fd84a1db2a0eb35a19cada3355d69e8c.nii.gz

MPG_1/sub-0027447/ses-1/mri/anon_misub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pp/7W/MD5E-s31463358--b2b63f4ef82156bac501062904febd78.nii.gz/MD5E-s31463358--b2b63f4ef82156bac501062904febd78.nii.gz

MPG_1/sub-0027447/ses-1/mri/anon_misub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mf/2f/MD5E-s25621049--9861f0c49b93f1fc472e61086a80b2f2.nii.gz/MD5E-s25621049--9861f0c49b93f1fc472e61086a80b2f2.nii.gz

MPG_1/sub-0027447/ses-1/mri/anon_msub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/qk/MD5E-s31463441--c4a0b95665455b1aff8133edacd8c0e0.nii.gz/MD5E-s31463441--c4a0b95665455b1aff8133edacd8c0e0.nii.gz

MPG_1/sub-0027447/ses-1/mri/anon_msub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8x/fw/MD5E-s26129129--02ba5f671ebcddcffb3e0348703bd295.nii.gz/MD5E-s26129129--02ba5f671ebcddcffb3e0348703bd295.nii.gz

MPG_1/sub-0027447/ses-1/mri/cat_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/fv/MD5E-s157396--f224d5041490369c5f1d678f13b76623.nii.gz/MD5E-s157396--f224d5041490369c5f1d678f13b76623.nii.gz

MPG_1/sub-0027447/ses-1/mri/cat_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mJ/Zj/MD5E-s172863--b4537b739a54f750dd0bd9b2c244f0cd.nii.gz/MD5E-s172863--b4537b739a54f750dd0bd9b2c244f0cd.nii.gz

MPG_1/sub-0027447/ses-1/mri/cobra_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/V6/MD5E-s107509--71dea5515ae9f9749bd0e5161ec2b27b.nii.gz/MD5E-s107509--71dea5515ae9f9749bd0e5161ec2b27b.nii.gz

MPG_1/sub-0027447/ses-1/mri/cobra_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vW/1Z/MD5E-s111921--a73ce852e005a663335d3807c625bfba.nii.gz/MD5E-s111921--a73ce852e005a663335d3807c625bfba.nii.gz

MPG_1/sub-0027447/ses-1/mri/hammers_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/mv/M2/MD5E-s306990--c6211b5257d8e3c32474436b0e136aab.nii.gz/MD5E-s306990--c6211b5257d8e3c32474436b0e136aab.nii.gz

MPG_1/sub-0027447/ses-1/mri/hammers_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027447/ses-1/mri/ibsr_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027447/ses-1/mri/ibsr_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/58/KG/MD5E-s368509--4f5b20b62a122156402c8d26abd3b832.nii.gz/MD5E-s368509--4f5b20b62a122156402c8d26abd3b832.nii.gz

MPG_1/sub-0027447/ses-1/mri/it_sub-0027447_ses-1_acq-inv1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/54/MD5E-s283--3e5e8de42ac8e5bef38987af6242e7cc.mat/MD5E-s283--3e5e8de42ac8e5bef38987af6242e7cc.mat

MPG_1/sub-0027447/ses-1/mri/it_sub-0027447_ses-1_acq-inv1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/pF/MD5E-s281--f2979cdc10db131f767471ac79971de0.mat/MD5E-s281--f2979cdc10db131f767471ac79971de0.mat

MPG_1/sub-0027447/ses-1/mri/it_sub-0027447_ses-1_acq-inv2_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g4/mw/MD5E-s282--e4c7cf4a30202590a2167dfb7a7613c0.mat/MD5E-s282--e4c7cf4a30202590a2167dfb7a7613c0.mat

MPG_1/sub-0027447/ses-1/mri/it_sub-0027447_ses-1_acq-inv2_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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MPG_1/sub-0027447/ses-1/mri/iy_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

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MPG_1/sub-0027447/ses-1/mri/iy_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027447/ses-1/mri/julichbrain_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027447/ses-1/mri/julichbrain_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027447/ses-1/mri/lpba40_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0p/v2/MD5E-s306718--3aded10e6023901956596354d8f6c59f.nii.gz/MD5E-s306718--3aded10e6023901956596354d8f6c59f.nii.gz

MPG_1/sub-0027447/ses-1/mri/lpba40_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027447/ses-1/mri/m0wp1sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

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MPG_1/sub-0027447/ses-1/mri/m0wp1sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

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MPG_1/sub-0027447/ses-1/mri/m0wp2sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

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MPG_1/sub-0027447/ses-1/mri/m0wp2sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

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MPG_1/sub-0027447/ses-1/mri/m0wp3sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

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MPG_1/sub-0027447/ses-1/mri/m0wp3sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027447/ses-1/mri/mori_sub-0027447_ses-1_acq-inv1_run-1_T1w.nii.gz

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MPG_1/sub-0027447/ses-1/mri/mori_sub-0027447_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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