[DATALAD RUNCMD] Compute NYU_2/sub-0025100/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025100/ses-1/anat/sub-0025100_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025100/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025100/ses-1/label/catROI_sub-0025100_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zj/k4/MD5E-s57825--58d1e1280b453a22bf84b721e5207f46.mat/MD5E-s57825--58d1e1280b453a22bf84b721e5207f46.mat

NYU_2/sub-0025100/ses-1/label/catROI_sub-0025100_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/XV/MD5E-s188814--680ac2255400872cd9814804fb605783.xml/MD5E-s188814--680ac2255400872cd9814804fb605783.xml

NYU_2/sub-0025100/ses-1/label/catROI_sub-0025100_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/km/GK/MD5E-s57754--5836d862589cdb671022cfd164cd4eec.mat/MD5E-s57754--5836d862589cdb671022cfd164cd4eec.mat

NYU_2/sub-0025100/ses-1/label/catROI_sub-0025100_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/16/P3/MD5E-s188782--96c3219a2770c4d8cf2e29939af3ca15.xml/MD5E-s188782--96c3219a2770c4d8cf2e29939af3ca15.xml

NYU_2/sub-0025100/ses-1/label/catROIs_sub-0025100_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/J9/MD5E-s120284--2854bf3d8aae5611715d064d67b254f4.mat/MD5E-s120284--2854bf3d8aae5611715d064d67b254f4.mat

NYU_2/sub-0025100/ses-1/label/catROIs_sub-0025100_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/FJ/MD5E-s332081--50ff0eeee537fe62e9c40f64ca1df117.xml/MD5E-s332081--50ff0eeee537fe62e9c40f64ca1df117.xml

NYU_2/sub-0025100/ses-1/label/catROIs_sub-0025100_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fg/M5/MD5E-s120259--a09594b017422152c383fe778f8a2e58.mat/MD5E-s120259--a09594b017422152c383fe778f8a2e58.mat

NYU_2/sub-0025100/ses-1/label/catROIs_sub-0025100_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kQ/63/MD5E-s332154--5dcba9a603fccce47f3ba30b9789731a.xml/MD5E-s332154--5dcba9a603fccce47f3ba30b9789731a.xml

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025100_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5J/0v/MD5E-s142536--26d1b637e4793a4cd5ce76d3b8deb6f9.nii.gz/MD5E-s142536--26d1b637e4793a4cd5ce76d3b8deb6f9.nii.gz

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xx/Zx/MD5E-s142747--1ce48efc9117800dd640d5561b88f4d9.nii.gz/MD5E-s142747--1ce48efc9117800dd640d5561b88f4d9.nii.gz

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025100_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/k3/MD5E-s158458--56d3b8845d500d0c7015512640842e60.nii.gz/MD5E-s158458--56d3b8845d500d0c7015512640842e60.nii.gz

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VQ/7k/MD5E-s158863--ef57d4a0f0e8fa7520250a9d926b4db3.nii.gz/MD5E-s158863--ef57d4a0f0e8fa7520250a9d926b4db3.nii.gz

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025100_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/wV/MD5E-s211914--378e8309e972792ea45c478cd9eb5ebb.nii.gz/MD5E-s211914--378e8309e972792ea45c478cd9eb5ebb.nii.gz

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gj/fm/MD5E-s213069--164515527442ed8c33c4e77876ae77f5.nii.gz/MD5E-s213069--164515527442ed8c33c4e77876ae77f5.nii.gz

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025100_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Qp/pk/MD5E-s234808--4cb4826b0eccf010822d9ecf7f63c494.nii.gz/MD5E-s234808--4cb4826b0eccf010822d9ecf7f63c494.nii.gz

NYU_2/sub-0025100/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3W/qz/MD5E-s235267--d6863d255a9bb33b96ed9ec1f0e93748.nii.gz/MD5E-s235267--d6863d255a9bb33b96ed9ec1f0e93748.nii.gz

NYU_2/sub-0025100/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025100_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/QZ/MD5E-s18986--227062029bab9656bd064db3d5748c3e.nii.gz/MD5E-s18986--227062029bab9656bd064db3d5748c3e.nii.gz

NYU_2/sub-0025100/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2v/gm/MD5E-s19008--0d8dbcd5407dc798ea661b4dac7338c7.nii.gz/MD5E-s19008--0d8dbcd5407dc798ea661b4dac7338c7.nii.gz

NYU_2/sub-0025100/ses-1/mri/aal3_sub-0025100_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/Ff/MD5E-s159613--9ef9cbc086ecfe544683bc1f20da5ad8.nii.gz/MD5E-s159613--9ef9cbc086ecfe544683bc1f20da5ad8.nii.gz

NYU_2/sub-0025100/ses-1/mri/aal3_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FW/wz/MD5E-s159524--21db0f35db59d851fe69f858475aa976.nii.gz/MD5E-s159524--21db0f35db59d851fe69f858475aa976.nii.gz

NYU_2/sub-0025100/ses-1/mri/anatomy3_sub-0025100_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/QK/MD5E-s114367--bb525088279e93edfd7545abca159378.nii.gz/MD5E-s114367--bb525088279e93edfd7545abca159378.nii.gz

NYU_2/sub-0025100/ses-1/mri/anatomy3_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ZF/FK/MD5E-s114445--d1dedbffac8ed84bf06ab4305f939a19.nii.gz/MD5E-s114445--d1dedbffac8ed84bf06ab4305f939a19.nii.gz

NYU_2/sub-0025100/ses-1/mri/anon_misub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/anon_misub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9x/3V/MD5E-s3656029--4448a916e0edc5eea4e9e6e3f7fcdf98.nii.gz/MD5E-s3656029--4448a916e0edc5eea4e9e6e3f7fcdf98.nii.gz

NYU_2/sub-0025100/ses-1/mri/anon_msub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/anon_msub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Vp/Jm/MD5E-s7117322--a43f79aa73cbbaba1e0d136360aeb164.nii.gz/MD5E-s7117322--a43f79aa73cbbaba1e0d136360aeb164.nii.gz

NYU_2/sub-0025100/ses-1/mri/cat_sub-0025100_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/8z/MD5E-s83960--05508c50b41fb28af49036a8da7a7c31.nii.gz/MD5E-s83960--05508c50b41fb28af49036a8da7a7c31.nii.gz

NYU_2/sub-0025100/ses-1/mri/cat_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6j/41/MD5E-s83528--8961977efb71b4775320f242e34fc4b8.nii.gz/MD5E-s83528--8961977efb71b4775320f242e34fc4b8.nii.gz

NYU_2/sub-0025100/ses-1/mri/cobra_sub-0025100_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/xf/Zm/MD5E-s39921--6332752511c7e19905cbae6144919a1c.nii.gz/MD5E-s39921--6332752511c7e19905cbae6144919a1c.nii.gz

NYU_2/sub-0025100/ses-1/mri/cobra_sub-0025100_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025100/ses-1/mri/hammers_sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/hammers_sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/ibsr_sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/ibsr_sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/it_sub-0025100_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/00/MD5E-s281--85cd5bac5a5daf461a711570b81e7d43.mat/MD5E-s281--85cd5bac5a5daf461a711570b81e7d43.mat

NYU_2/sub-0025100/ses-1/mri/it_sub-0025100_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025100/ses-1/mri/it_sub-0025100_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025100/ses-1/mri/it_sub-0025100_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025100/ses-1/mri/iy_sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/iy_sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/julichbrain_sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/julichbrain_sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/lpba40_sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/lpba40_sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/m0wp1sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/m0wp1sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/m0wp2sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/m0wp2sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/m0wp3sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/m0wp3sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/mori_sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/mori_sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/mwp1sub-0025100_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/mwp1sub-0025100_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025100/ses-1/mri/mwp2sub-0025100_ses-1_run-1_T1w.nii.gz

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