[DATALAD RUNCMD] Compute UWM/sub-0027278/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/UWM/sub-0027278/ses-1/anat/sub-0027278_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "UWM/sub-0027278/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UWM/sub-0027278/ses-1/label/catROI_sub-0027278_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/vk/MD5E-s58059--63cda34d8455cac65131661d98f5cafc.mat/MD5E-s58059--63cda34d8455cac65131661d98f5cafc.mat

UWM/sub-0027278/ses-1/label/catROI_sub-0027278_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/FX/MD5E-s188594--99db75817a1928532b56beca5caf8a04.xml/MD5E-s188594--99db75817a1928532b56beca5caf8a04.xml

UWM/sub-0027278/ses-1/label/catROIs_sub-0027278_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jv/g1/MD5E-s120043--d054ac94db8a86925ab8d7a542b288ee.mat/MD5E-s120043--d054ac94db8a86925ab8d7a542b288ee.mat

UWM/sub-0027278/ses-1/label/catROIs_sub-0027278_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/z6/MD5E-s332218--2cf7901764551fe84b2d9e4492ae4bc5.xml/MD5E-s332218--2cf7901764551fe84b2d9e4492ae4bc5.xml

UWM/sub-0027278/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UWM/sub-0027278/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/Pj/MD5E-s200839--1ecadd5456277fa24b489e0a57a6b840.nii.gz/MD5E-s200839--1ecadd5456277fa24b489e0a57a6b840.nii.gz

UWM/sub-0027278/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UWM/sub-0027278/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/jZ/MD5E-s226112--671a3bb545c4e849220b462e6862a843.nii.gz/MD5E-s226112--671a3bb545c4e849220b462e6862a843.nii.gz

UWM/sub-0027278/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UWM/sub-0027278/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/59/MD5E-s284263--3fcc1f5ea75d4ac7849549bfcade2490.nii.gz/MD5E-s284263--3fcc1f5ea75d4ac7849549bfcade2490.nii.gz

UWM/sub-0027278/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UWM/sub-0027278/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/9k/MD5E-s317217--d27339a8b4d7208a7d23146158a890b2.nii.gz/MD5E-s317217--d27339a8b4d7208a7d23146158a890b2.nii.gz

UWM/sub-0027278/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UWM/sub-0027278/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/P0/MD5E-s24909--5a461656622ca81fb217091e576f9624.nii.gz/MD5E-s24909--5a461656622ca81fb217091e576f9624.nii.gz

UWM/sub-0027278/ses-1/mri/aal3_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UWM/sub-0027278/ses-1/mri/aal3_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3g/QW/MD5E-s227723--cee040f51fe7c6431fb478ed38fe0414.nii.gz/MD5E-s227723--cee040f51fe7c6431fb478ed38fe0414.nii.gz

UWM/sub-0027278/ses-1/mri/anatomy3_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UWM/sub-0027278/ses-1/mri/anatomy3_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/6g/MD5E-s162324--fd20cecffceb7519f286c94aea2195b7.nii.gz/MD5E-s162324--fd20cecffceb7519f286c94aea2195b7.nii.gz

UWM/sub-0027278/ses-1/mri/anon_misub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/W7/MD5E-s5231264--13f6646b581a8df39c465b0af8035b22.nii.gz/MD5E-s5231264--13f6646b581a8df39c465b0af8035b22.nii.gz

UWM/sub-0027278/ses-1/mri/anon_msub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FF/x1/MD5E-s10843056--0264cef1a4b3f6204fcc81c2d240a0e6.nii.gz/MD5E-s10843056--0264cef1a4b3f6204fcc81c2d240a0e6.nii.gz

UWM/sub-0027278/ses-1/mri/cat_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/28/MD5E-s119508--8a0b0bcc6730771b729119185516afcb.nii.gz/MD5E-s119508--8a0b0bcc6730771b729119185516afcb.nii.gz

UWM/sub-0027278/ses-1/mri/cobra_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UWM/sub-0027278/ses-1/mri/cobra_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/wx/MD5E-s55041--bbc8f26e3f6496a083595c0154b8fb7c.nii.gz/MD5E-s55041--bbc8f26e3f6496a083595c0154b8fb7c.nii.gz

UWM/sub-0027278/ses-1/mri/hammers_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UWM/sub-0027278/ses-1/mri/hammers_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MW/V9/MD5E-s176957--529399d8c6ba6c7288536433ac2926bd.nii.gz/MD5E-s176957--529399d8c6ba6c7288536433ac2926bd.nii.gz

UWM/sub-0027278/ses-1/mri/ibsr_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UWM/sub-0027278/ses-1/mri/ibsr_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027278/ses-1/mri/it_sub-0027278_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/zJ/MD5E-s283--89d846d188eb99d74d97813f1a052e50.mat/MD5E-s283--89d846d188eb99d74d97813f1a052e50.mat

UWM/sub-0027278/ses-1/mri/it_sub-0027278_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/77/MD5E-s283--5f72abfa4385df23748f672ab1128bc1.mat/MD5E-s283--5f72abfa4385df23748f672ab1128bc1.mat

UWM/sub-0027278/ses-1/mri/iy_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/Q0/MD5E-s49815979--a95ae9bbe1834a725a85ca6b513bbef5.nii.gz/MD5E-s49815979--a95ae9bbe1834a725a85ca6b513bbef5.nii.gz

UWM/sub-0027278/ses-1/mri/julichbrain_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UWM/sub-0027278/ses-1/mri/julichbrain_sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027278/ses-1/mri/lpba40_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027278/ses-1/mri/lpba40_sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/m0wp1sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/m0wp2sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/m0wp3sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027278/ses-1/mri/mori_sub-0027278_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027278/ses-1/mri/mori_sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/mwp1sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027278/ses-1/mri/mwp2sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/mwp3sub-0027278_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027278/ses-1/mri/neuromorphometrics_sub-0027278_ses-1_run-1_T1w.csv

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UWM/sub-0027278/ses-1/mri/neuromorphometrics_sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/p0sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/p1sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/p2sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/p3sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/rp1sub-0027278_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027278/ses-1/mri/rp2sub-0027278_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027278/ses-1/mri/rp3sub-0027278_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027278/ses-1/mri/t_sub-0027278_ses-1_run-1_T1w_affine_reorient.mat

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UWM/sub-0027278/ses-1/mri/t_sub-0027278_ses-1_run-1_T1w_rigid_reorient.mat

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UWM/sub-0027278/ses-1/mri/thalamus_sub-0027278_ses-1_run-1_T1w.csv

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UWM/sub-0027278/ses-1/mri/thalamus_sub-0027278_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027278/ses-1/mri/wj_sub-0027278_ses-1_run-1_T1w.nii.gz

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