[DATALAD RUNCMD] Compute SWU_4/sub-0025720/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025720/ses-2/anat/sub-0025720_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025720/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025720/ses-2/label/catROI_sub-0025720_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/66/MD5E-s57976--b408ea126f7c2572acc228e993541893.mat/MD5E-s57976--b408ea126f7c2572acc228e993541893.mat

SWU_4/sub-0025720/ses-2/label/catROI_sub-0025720_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g4/Qj/MD5E-s188499--cd8f95366dbfdf1a3718cbf8cd8c7613.xml/MD5E-s188499--cd8f95366dbfdf1a3718cbf8cd8c7613.xml

SWU_4/sub-0025720/ses-2/label/catROIs_sub-0025720_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/56/MD5E-s120036--8b6a8b9fc35ad7d41716cf6b19aa380d.mat/MD5E-s120036--8b6a8b9fc35ad7d41716cf6b19aa380d.mat

SWU_4/sub-0025720/ses-2/label/catROIs_sub-0025720_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/Fq/MD5E-s332144--4d3a32938dafea071805d015a213dbd4.xml/MD5E-s332144--4d3a32938dafea071805d015a213dbd4.xml

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/g4/MD5E-s175514--58804c3791503b23ea891b8bc47dc2ec.nii.gz/MD5E-s175514--58804c3791503b23ea891b8bc47dc2ec.nii.gz

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/07/MD5E-s196391--5396e8562e1322c9260b05d7be7f3037.nii.gz/MD5E-s196391--5396e8562e1322c9260b05d7be7f3037.nii.gz

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/31/MD5E-s264999--8eeed6fb0e5f5aeca8fd4104de31c8e5.nii.gz/MD5E-s264999--8eeed6fb0e5f5aeca8fd4104de31c8e5.nii.gz

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025720/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/m5/MD5E-s293299--3c4d1e4e09e67bd0d011cbd44f7c38dc.nii.gz/MD5E-s293299--3c4d1e4e09e67bd0d011cbd44f7c38dc.nii.gz

SWU_4/sub-0025720/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025720/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/93/MD5E-s25206--0c0d646c5b9633f0a8a846ec90e0101e.nii.gz/MD5E-s25206--0c0d646c5b9633f0a8a846ec90e0101e.nii.gz

SWU_4/sub-0025720/ses-2/mri/aal3_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025720/ses-2/mri/aal3_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/2q/MD5E-s196709--75472218b88c58d0315018fc689e9a20.nii.gz/MD5E-s196709--75472218b88c58d0315018fc689e9a20.nii.gz

SWU_4/sub-0025720/ses-2/mri/anatomy3_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025720/ses-2/mri/anatomy3_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/53/MD5E-s143814--afa39a386df7f03f3aeaeddf5f668e39.nii.gz/MD5E-s143814--afa39a386df7f03f3aeaeddf5f668e39.nii.gz

SWU_4/sub-0025720/ses-2/mri/anon_misub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/zM/MD5E-s8642724--649bf962bc30bfe9fafef2a9ed045716.nii.gz/MD5E-s8642724--649bf962bc30bfe9fafef2a9ed045716.nii.gz

SWU_4/sub-0025720/ses-2/mri/anon_msub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/J3/MD5E-s8362889--ae4a5c013530315a3666b9bfc082adcc.nii.gz/MD5E-s8362889--ae4a5c013530315a3666b9bfc082adcc.nii.gz

SWU_4/sub-0025720/ses-2/mri/cat_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/1V/MD5E-s102187--0cf6b5947ed68ba344bb2842aad4ce8d.nii.gz/MD5E-s102187--0cf6b5947ed68ba344bb2842aad4ce8d.nii.gz

SWU_4/sub-0025720/ses-2/mri/cobra_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025720/ses-2/mri/cobra_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/0P/MD5E-s48400--f7ad73cf20bfe1188986c292a72b9041.nii.gz/MD5E-s48400--f7ad73cf20bfe1188986c292a72b9041.nii.gz

SWU_4/sub-0025720/ses-2/mri/hammers_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025720/ses-2/mri/hammers_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/V4/MD5E-s154743--38051f40191ec4b81e00a4dff3b4e005.nii.gz/MD5E-s154743--38051f40191ec4b81e00a4dff3b4e005.nii.gz

SWU_4/sub-0025720/ses-2/mri/ibsr_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025720/ses-2/mri/ibsr_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/VX/MD5E-s164142--3fc2f1037754ab74786db98c614ee099.nii.gz/MD5E-s164142--3fc2f1037754ab74786db98c614ee099.nii.gz

SWU_4/sub-0025720/ses-2/mri/it_sub-0025720_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/92/MD5E-s282--34811324452d3d8188d71ca375d82d92.mat/MD5E-s282--34811324452d3d8188d71ca375d82d92.mat

SWU_4/sub-0025720/ses-2/mri/it_sub-0025720_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/kw/MD5E-s282--fe7dbd1182bc9f21c01f5ef606b34196.mat/MD5E-s282--fe7dbd1182bc9f21c01f5ef606b34196.mat

SWU_4/sub-0025720/ses-2/mri/iy_sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/q0/MD5E-s49246286--c3cbedf1c198ec7eea10bd244fb75a7c.nii.gz/MD5E-s49246286--c3cbedf1c198ec7eea10bd244fb75a7c.nii.gz

SWU_4/sub-0025720/ses-2/mri/julichbrain_sub-0025720_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025720/ses-2/mri/julichbrain_sub-0025720_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Xk/1F/MD5E-s209782--a72b9dc50e4d9cf57f04d2149ceb37b2.nii.gz/MD5E-s209782--a72b9dc50e4d9cf57f04d2149ceb37b2.nii.gz

SWU_4/sub-0025720/ses-2/mri/lpba40_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025720/ses-2/mri/lpba40_sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/m0wp1sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/m7/MD5E-s2561681--48e68af8fd299988aaf464e072f1e357.nii.gz/MD5E-s2561681--48e68af8fd299988aaf464e072f1e357.nii.gz

SWU_4/sub-0025720/ses-2/mri/m0wp2sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/98/MD5E-s2344960--160f3c91610b4384be3ddeaea999a72d.nii.gz/MD5E-s2344960--160f3c91610b4384be3ddeaea999a72d.nii.gz

SWU_4/sub-0025720/ses-2/mri/m0wp3sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/kx/MD5E-s2424582--f15af89b80dcae93af448a964acb2d20.nii.gz/MD5E-s2424582--f15af89b80dcae93af448a964acb2d20.nii.gz

SWU_4/sub-0025720/ses-2/mri/mori_sub-0025720_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025720/ses-2/mri/mori_sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/mwp1sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/mwp2sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/mwp3sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/neuromorphometrics_sub-0025720_ses-2_run-1_T1w.csv

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SWU_4/sub-0025720/ses-2/mri/neuromorphometrics_sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/p0sub-0025720_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/FF/MD5E-s666586--66f6f304055fd26cef8077f2d4cf8d5e.nii.gz/MD5E-s666586--66f6f304055fd26cef8077f2d4cf8d5e.nii.gz

SWU_4/sub-0025720/ses-2/mri/p1sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/p2sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/p3sub-0025720_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025720/ses-2/mri/rp1sub-0025720_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025720/ses-2/mri/rp2sub-0025720_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025720/ses-2/mri/rp3sub-0025720_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025720/ses-2/mri/t_sub-0025720_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025720/ses-2/mri/t_sub-0025720_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025720/ses-2/mri/thalamus_sub-0025720_ses-2_run-1_T1w.csv

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SWU_4/sub-0025720/ses-2/mri/thalamus_sub-0025720_ses-2_run-1_T1w.nii.gz

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