[DATALAD RUNCMD] Compute HNU_1/sub-0025442/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025442/ses-1/anat/sub-0025442_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025442/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025442/ses-1/label/catROI_sub-0025442_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/VG/MD5E-s61347--36f28d3cb577c0fff9f72462039a75a0.mat/MD5E-s61347--36f28d3cb577c0fff9f72462039a75a0.mat

HNU_1/sub-0025442/ses-1/label/catROI_sub-0025442_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/P0/MD5E-s189452--2f1ae5128236386adf1c52f71dac28ac.xml/MD5E-s189452--2f1ae5128236386adf1c52f71dac28ac.xml

HNU_1/sub-0025442/ses-1/label/catROIs_sub-0025442_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xj/wF/MD5E-s120160--e892e2b8b48e744fe5a5fae59c14757d.mat/MD5E-s120160--e892e2b8b48e744fe5a5fae59c14757d.mat

HNU_1/sub-0025442/ses-1/label/catROIs_sub-0025442_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/ZV/MD5E-s332207--5ec918c0854a2196707abbecf65dacc8.xml/MD5E-s332207--5ec918c0854a2196707abbecf65dacc8.xml

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9g/QG/MD5E-s162117--955dfa3a568f503d7f8fb64130396bca.nii.gz/MD5E-s162117--955dfa3a568f503d7f8fb64130396bca.nii.gz

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w6/58/MD5E-s180354--2ff1aa004a2ec4b90a9721aad6c5da2b.nii.gz/MD5E-s180354--2ff1aa004a2ec4b90a9721aad6c5da2b.nii.gz

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/42/MD5E-s245186--3700e78ac52b7b5cb5254d7162f0ef69.nii.gz/MD5E-s245186--3700e78ac52b7b5cb5254d7162f0ef69.nii.gz

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025442/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/ZX/MD5E-s271826--8f8318a2dee8407ea42964d200364946.nii.gz/MD5E-s271826--8f8318a2dee8407ea42964d200364946.nii.gz

HNU_1/sub-0025442/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025442/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/j8/MD5E-s25017--6e2384c4bff9503aac4151371587ac74.nii.gz/MD5E-s25017--6e2384c4bff9503aac4151371587ac74.nii.gz

HNU_1/sub-0025442/ses-1/mri/aal3_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025442/ses-1/mri/aal3_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/16/MD5E-s182647--0fdfdb2682f7da50948db804c34afa66.nii.gz/MD5E-s182647--0fdfdb2682f7da50948db804c34afa66.nii.gz

HNU_1/sub-0025442/ses-1/mri/anatomy3_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025442/ses-1/mri/anatomy3_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/GM/MD5E-s134556--bffbbd65034819c9430555dbb7f7b07d.nii.gz/MD5E-s134556--bffbbd65034819c9430555dbb7f7b07d.nii.gz

HNU_1/sub-0025442/ses-1/mri/anon_misub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/6X/MD5E-s4793567--37997fa2f0f1f9b198ffbda7bf4cf74e.nii.gz/MD5E-s4793567--37997fa2f0f1f9b198ffbda7bf4cf74e.nii.gz

HNU_1/sub-0025442/ses-1/mri/anon_msub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/14/MD5E-s10759971--a02a57714ebe0ccf70b5d93d69be3365.nii.gz/MD5E-s10759971--a02a57714ebe0ccf70b5d93d69be3365.nii.gz

HNU_1/sub-0025442/ses-1/mri/cat_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/vJ/MD5E-s101197--7474a91dfc5240907668af73e2dce47d.nii.gz/MD5E-s101197--7474a91dfc5240907668af73e2dce47d.nii.gz

HNU_1/sub-0025442/ses-1/mri/cobra_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025442/ses-1/mri/cobra_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/vm/MD5E-s48657--e83b6993877e1a74afb90ad7fa10ba90.nii.gz/MD5E-s48657--e83b6993877e1a74afb90ad7fa10ba90.nii.gz

HNU_1/sub-0025442/ses-1/mri/hammers_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025442/ses-1/mri/hammers_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/pg/MD5E-s145863--f6dbb9581414f2da0b60ae7c941f53d5.nii.gz/MD5E-s145863--f6dbb9581414f2da0b60ae7c941f53d5.nii.gz

HNU_1/sub-0025442/ses-1/mri/ibsr_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025442/ses-1/mri/ibsr_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/w9/MD5E-s152439--5131078386dfa129dbe6199518ad255a.nii.gz/MD5E-s152439--5131078386dfa129dbe6199518ad255a.nii.gz

HNU_1/sub-0025442/ses-1/mri/it_sub-0025442_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/X3/MD5E-s283--b2ba8c40fbc6f87dbf899108cdda34aa.mat/MD5E-s283--b2ba8c40fbc6f87dbf899108cdda34aa.mat

HNU_1/sub-0025442/ses-1/mri/it_sub-0025442_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/zV/MD5E-s285--e7fb07f6a24d64fc27f5cd2b41853c73.mat/MD5E-s285--e7fb07f6a24d64fc27f5cd2b41853c73.mat

HNU_1/sub-0025442/ses-1/mri/iy_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/zM/MD5E-s43314616--1bf6415460c33009f448a7b8f882bc6b.nii.gz/MD5E-s43314616--1bf6415460c33009f448a7b8f882bc6b.nii.gz

HNU_1/sub-0025442/ses-1/mri/julichbrain_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025442/ses-1/mri/julichbrain_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/47/MD5E-s195064--c6dacc500874966d30c63e7a23694e85.nii.gz/MD5E-s195064--c6dacc500874966d30c63e7a23694e85.nii.gz

HNU_1/sub-0025442/ses-1/mri/lpba40_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025442/ses-1/mri/lpba40_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/xW/MD5E-s142192--9f195787faa91670203e43f14fe45f96.nii.gz/MD5E-s142192--9f195787faa91670203e43f14fe45f96.nii.gz

HNU_1/sub-0025442/ses-1/mri/m0wp1sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V7/48/MD5E-s2600571--b2446cd0ec0425c914a778ccac8a7563.nii.gz/MD5E-s2600571--b2446cd0ec0425c914a778ccac8a7563.nii.gz

HNU_1/sub-0025442/ses-1/mri/m0wp2sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/Fw/MD5E-s2351752--faa607beada2252709aea26a3011931e.nii.gz/MD5E-s2351752--faa607beada2252709aea26a3011931e.nii.gz

HNU_1/sub-0025442/ses-1/mri/m0wp3sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/fp/MD5E-s2620847--85b234e9e0a8ff5a5a4c3a24aa746339.nii.gz/MD5E-s2620847--85b234e9e0a8ff5a5a4c3a24aa746339.nii.gz

HNU_1/sub-0025442/ses-1/mri/mori_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025442/ses-1/mri/mori_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/PX/MD5E-s171119--ec290acd9469d6467833b53a5a9df88d.nii.gz/MD5E-s171119--ec290acd9469d6467833b53a5a9df88d.nii.gz

HNU_1/sub-0025442/ses-1/mri/mwp1sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/gw/MD5E-s2611072--78a84fff698fab41f5606e88358b03de.nii.gz/MD5E-s2611072--78a84fff698fab41f5606e88358b03de.nii.gz

HNU_1/sub-0025442/ses-1/mri/mwp2sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/4Q/MD5E-s2358542--18eb5d6e5dbfb29e430a8195ed32fcd7.nii.gz/MD5E-s2358542--18eb5d6e5dbfb29e430a8195ed32fcd7.nii.gz

HNU_1/sub-0025442/ses-1/mri/mwp3sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/2j/MD5E-s2620863--82c6f43e7bbbbc4bcc0ae80b7b26a2c4.nii.gz/MD5E-s2620863--82c6f43e7bbbbc4bcc0ae80b7b26a2c4.nii.gz

HNU_1/sub-0025442/ses-1/mri/neuromorphometrics_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025442/ses-1/mri/neuromorphometrics_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/kw/MD5E-s196611--c3ebddadf46d65a0450b5114c475b920.nii.gz/MD5E-s196611--c3ebddadf46d65a0450b5114c475b920.nii.gz

HNU_1/sub-0025442/ses-1/mri/p0sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kV/3Z/MD5E-s617154--e191d7492e9636b1ce8fc211042e200c.nii.gz/MD5E-s617154--e191d7492e9636b1ce8fc211042e200c.nii.gz

HNU_1/sub-0025442/ses-1/mri/p1sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/Xp/MD5E-s649560--ef32653076db2b5e31575f849ec63ee5.nii.gz/MD5E-s649560--ef32653076db2b5e31575f849ec63ee5.nii.gz

HNU_1/sub-0025442/ses-1/mri/p2sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025442/ses-1/mri/p3sub-0025442_ses-1_run-1_T1w.nii.gz

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HNU_1/sub-0025442/ses-1/mri/rp1sub-0025442_ses-1_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025442/ses-1/mri/rp2sub-0025442_ses-1_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025442/ses-1/mri/rp3sub-0025442_ses-1_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025442/ses-1/mri/t_sub-0025442_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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HNU_1/sub-0025442/ses-1/mri/t_sub-0025442_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/46/MD5E-s284--a57b4199b80ed8dc9daba1724e5a3e6b.mat/MD5E-s284--a57b4199b80ed8dc9daba1724e5a3e6b.mat

HNU_1/sub-0025442/ses-1/mri/thalamus_sub-0025442_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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HNU_1/sub-0025442/ses-1/mri/thalamus_sub-0025442_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025442/ses-1/mri/wj_sub-0025442_ses-1_run-1_T1w.nii.gz

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