[DATALAD RUNCMD] Compute NYU_2/sub-0025046/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025046/ses-1/anat/sub-0025046_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025046/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025046/ses-1/label/catROI_sub-0025046_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8g/Kq/MD5E-s57812--00382218e43985af6fbe4989eda035bb.mat/MD5E-s57812--00382218e43985af6fbe4989eda035bb.mat

NYU_2/sub-0025046/ses-1/label/catROI_sub-0025046_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fk/Vk/MD5E-s188932--71718627dce73ba54153f2c0d791c36e.xml/MD5E-s188932--71718627dce73ba54153f2c0d791c36e.xml

NYU_2/sub-0025046/ses-1/label/catROI_sub-0025046_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/zq/MD5E-s57823--de150f17b870f46604595711ffa4b8bf.mat/MD5E-s57823--de150f17b870f46604595711ffa4b8bf.mat

NYU_2/sub-0025046/ses-1/label/catROI_sub-0025046_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/mk/MD5E-s188895--a3eddc61149c83f99cb752517a9f48d0.xml/MD5E-s188895--a3eddc61149c83f99cb752517a9f48d0.xml

NYU_2/sub-0025046/ses-1/label/catROIs_sub-0025046_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g5/88/MD5E-s120118--b92e0a201367cd3c55f82f96dc77d104.mat/MD5E-s120118--b92e0a201367cd3c55f82f96dc77d104.mat

NYU_2/sub-0025046/ses-1/label/catROIs_sub-0025046_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/V0/jQ/MD5E-s332065--e7c5d3d6dba84c95378699ccdf0bbc94.xml/MD5E-s332065--e7c5d3d6dba84c95378699ccdf0bbc94.xml

NYU_2/sub-0025046/ses-1/label/catROIs_sub-0025046_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/P7/MD5E-s120114--044aef5516286039ccf5733ae19a9558.mat/MD5E-s120114--044aef5516286039ccf5733ae19a9558.mat

NYU_2/sub-0025046/ses-1/label/catROIs_sub-0025046_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/ZJ/MD5E-s332119--1956796e562decf48ea518c9329da186.xml/MD5E-s332119--1956796e562decf48ea518c9329da186.xml

NYU_2/sub-0025046/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0G/Ff/MD5E-s137952--08593d56e77db6d794bcec50d7b5c651.nii.gz/MD5E-s137952--08593d56e77db6d794bcec50d7b5c651.nii.gz

NYU_2/sub-0025046/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/m2/MD5E-s137634--9f93f3ab4b2ac1da08a930fabe78ab46.nii.gz/MD5E-s137634--9f93f3ab4b2ac1da08a930fabe78ab46.nii.gz

NYU_2/sub-0025046/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/73/7Z/MD5E-s153391--2e630e10be97edd0f9c57959f0b8bfa0.nii.gz/MD5E-s153391--2e630e10be97edd0f9c57959f0b8bfa0.nii.gz

NYU_2/sub-0025046/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/QM/MD5E-s153360--8f8a8e0147121b3f8fd963d114d6ae4a.nii.gz/MD5E-s153360--8f8a8e0147121b3f8fd963d114d6ae4a.nii.gz

NYU_2/sub-0025046/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5v/zG/MD5E-s208290--394896db54848a364b4e02035888e2fb.nii.gz/MD5E-s208290--394896db54848a364b4e02035888e2fb.nii.gz

NYU_2/sub-0025046/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/gW/MD5E-s207886--64df9d1e22546ebe55192ace574d0de6.nii.gz/MD5E-s207886--64df9d1e22546ebe55192ace574d0de6.nii.gz

NYU_2/sub-0025046/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/xj/MD5E-s229345--99ee0bce5bd4d2f158652c21ea63325b.nii.gz/MD5E-s229345--99ee0bce5bd4d2f158652c21ea63325b.nii.gz

NYU_2/sub-0025046/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mp/mX/MD5E-s18739--48113a7d38a95970449b09609f151baa.nii.gz/MD5E-s18739--48113a7d38a95970449b09609f151baa.nii.gz

NYU_2/sub-0025046/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/k1/MD5E-s18621--d5fb4af0d02f4eeee729c225b8074f93.nii.gz/MD5E-s18621--d5fb4af0d02f4eeee729c225b8074f93.nii.gz

NYU_2/sub-0025046/ses-1/mri/aal3_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0Z/Mx/MD5E-s157396--0c67a1c2512578a22f2a20ffdf86d457.nii.gz/MD5E-s157396--0c67a1c2512578a22f2a20ffdf86d457.nii.gz

NYU_2/sub-0025046/ses-1/mri/aal3_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/m2/MD5E-s157063--998d2e9f58c9060db2d55a86cc37373a.nii.gz/MD5E-s157063--998d2e9f58c9060db2d55a86cc37373a.nii.gz

NYU_2/sub-0025046/ses-1/mri/anatomy3_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/anatomy3_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZM/p0/MD5E-s110174--7c5277f559b89e1a0862934b771d0c26.nii.gz/MD5E-s110174--7c5277f559b89e1a0862934b771d0c26.nii.gz

NYU_2/sub-0025046/ses-1/mri/anon_misub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/anon_misub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/P8/MD5E-s3843424--ee11f4bd985b6d1eef8375e74f2e4212.nii.gz/MD5E-s3843424--ee11f4bd985b6d1eef8375e74f2e4212.nii.gz

NYU_2/sub-0025046/ses-1/mri/anon_msub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/anon_msub-0025046_ses-1_run-2_T1w.nii.gz

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+../../../../.git/annex/objects/vm/m0/MD5E-s8689715--6936b67e752ad46752541ea9cc068d33.nii.gz/MD5E-s8689715--6936b67e752ad46752541ea9cc068d33.nii.gz

NYU_2/sub-0025046/ses-1/mri/cat_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9z/6Z/MD5E-s82192--edf3d37ed38cdd855ba0be3652a2d2f1.nii.gz/MD5E-s82192--edf3d37ed38cdd855ba0be3652a2d2f1.nii.gz

NYU_2/sub-0025046/ses-1/mri/cat_sub-0025046_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/G9/MD5E-s82022--2d4d499076ee8fcffe57aef51be7723f.nii.gz/MD5E-s82022--2d4d499076ee8fcffe57aef51be7723f.nii.gz

NYU_2/sub-0025046/ses-1/mri/cobra_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/cobra_sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/hammers_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/hammers_sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/ibsr_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/ibsr_sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/it_sub-0025046_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mv/XM/MD5E-s282--a411f74e054b4744416648bed299ab80.mat/MD5E-s282--a411f74e054b4744416648bed299ab80.mat

NYU_2/sub-0025046/ses-1/mri/it_sub-0025046_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/it_sub-0025046_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025046/ses-1/mri/it_sub-0025046_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025046/ses-1/mri/iy_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/iy_sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/julichbrain_sub-0025046_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/julichbrain_sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/lpba40_sub-0025046_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025046/ses-1/mri/lpba40_sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/m0wp1sub-0025046_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/m0wp1sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/m0wp2sub-0025046_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/m0wp2sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/m0wp3sub-0025046_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/m0wp3sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/mori_sub-0025046_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/mori_sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/mwp1sub-0025046_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/mwp1sub-0025046_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025046/ses-1/mri/mwp2sub-0025046_ses-1_run-1_T1w.nii.gz

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