[DATALAD RUNCMD] Compute BNU_1/sub-0025894/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025894/ses-1/anat/sub-0025894_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025894/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025894/ses-1/label/catROI_sub-0025894_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/q7/MD5E-s61227--d30103bdeb9e4f9a7d2b1c5b78487f25.mat/MD5E-s61227--d30103bdeb9e4f9a7d2b1c5b78487f25.mat

BNU_1/sub-0025894/ses-1/label/catROI_sub-0025894_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/3x/MD5E-s188821--3a3a42a1b86be3061a10db6d0bb4060e.xml/MD5E-s188821--3a3a42a1b86be3061a10db6d0bb4060e.xml

BNU_1/sub-0025894/ses-1/label/catROIs_sub-0025894_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jw/1K/MD5E-s120080--c310b466cfa44e4ec6ae233cb3fef0d7.mat/MD5E-s120080--c310b466cfa44e4ec6ae233cb3fef0d7.mat

BNU_1/sub-0025894/ses-1/label/catROIs_sub-0025894_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/Fq/MD5E-s332117--fb4aad01bcacff0d00b417d889699908.xml/MD5E-s332117--fb4aad01bcacff0d00b417d889699908.xml

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/q1/MD5E-s140478--e1ce45d70618e992330a7a2678d26c2b.nii.gz/MD5E-s140478--e1ce45d70618e992330a7a2678d26c2b.nii.gz

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gx/3m/MD5E-s159805--3b0946e94996a330bdcf0711444e6884.nii.gz/MD5E-s159805--3b0946e94996a330bdcf0711444e6884.nii.gz

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/5K/MD5E-s215216--90ac682e69e1cf1ce875e02ef1546b86.nii.gz/MD5E-s215216--90ac682e69e1cf1ce875e02ef1546b86.nii.gz

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025894/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/vf/MD5E-s239589--8d522e449fcbc7494ac9df22ddbeae2a.nii.gz/MD5E-s239589--8d522e449fcbc7494ac9df22ddbeae2a.nii.gz

BNU_1/sub-0025894/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025894/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/m9/MD5E-s19900--fbe350b65cc88f2b2e049afb1ae96456.nii.gz/MD5E-s19900--fbe350b65cc88f2b2e049afb1ae96456.nii.gz

BNU_1/sub-0025894/ses-1/mri/aal3_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025894/ses-1/mri/aal3_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/K9/MD5E-s160437--6565175f9d094e4794894e53abe4c441.nii.gz/MD5E-s160437--6565175f9d094e4794894e53abe4c441.nii.gz

BNU_1/sub-0025894/ses-1/mri/anatomy3_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025894/ses-1/mri/anatomy3_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5v/KZ/MD5E-s115339--1660d24a3a2c525fa2dd5462785044a5.nii.gz/MD5E-s115339--1660d24a3a2c525fa2dd5462785044a5.nii.gz

BNU_1/sub-0025894/ses-1/mri/anon_misub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/X8/MD5E-s3832277--4236660455725c6fa8c0b633595e433e.nii.gz/MD5E-s3832277--4236660455725c6fa8c0b633595e433e.nii.gz

BNU_1/sub-0025894/ses-1/mri/anon_msub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/w8/MD5E-s10163350--9f38474f5c8ff8e5fa262c910d042fe7.nii.gz/MD5E-s10163350--9f38474f5c8ff8e5fa262c910d042fe7.nii.gz

BNU_1/sub-0025894/ses-1/mri/cat_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/K4/MD5E-s85969--0c9180b43a4b8bcbdbcb646dcaf3dca7.nii.gz/MD5E-s85969--0c9180b43a4b8bcbdbcb646dcaf3dca7.nii.gz

BNU_1/sub-0025894/ses-1/mri/cobra_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025894/ses-1/mri/cobra_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/qz/MD5E-s40226--47ce889fe8cd343303cf2165e92fd006.nii.gz/MD5E-s40226--47ce889fe8cd343303cf2165e92fd006.nii.gz

BNU_1/sub-0025894/ses-1/mri/hammers_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025894/ses-1/mri/hammers_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/fm/MD5E-s128412--0c8ae71280ec0e1750a926012c7b3dcc.nii.gz/MD5E-s128412--0c8ae71280ec0e1750a926012c7b3dcc.nii.gz

BNU_1/sub-0025894/ses-1/mri/ibsr_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025894/ses-1/mri/ibsr_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/zW/MD5E-s134245--b56e9980c5565f3053b2e7b6d8ab376b.nii.gz/MD5E-s134245--b56e9980c5565f3053b2e7b6d8ab376b.nii.gz

BNU_1/sub-0025894/ses-1/mri/it_sub-0025894_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/kP/MD5E-s283--98c6ce15909608d515bf8794964a4c29.mat/MD5E-s283--98c6ce15909608d515bf8794964a4c29.mat

BNU_1/sub-0025894/ses-1/mri/it_sub-0025894_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/QJ/MD5E-s284--63baf7578ebf43a2f25ec46966e24092.mat/MD5E-s284--63baf7578ebf43a2f25ec46966e24092.mat

BNU_1/sub-0025894/ses-1/mri/iy_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FF/X1/MD5E-s32914138--40125c9664e21b7254c75ede37aa391b.nii.gz/MD5E-s32914138--40125c9664e21b7254c75ede37aa391b.nii.gz

BNU_1/sub-0025894/ses-1/mri/julichbrain_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025894/ses-1/mri/julichbrain_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/m3/MD5E-s172846--53804c878fed43244a37fe9d399dc53c.nii.gz/MD5E-s172846--53804c878fed43244a37fe9d399dc53c.nii.gz

BNU_1/sub-0025894/ses-1/mri/lpba40_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025894/ses-1/mri/lpba40_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/3p/MD5E-s126279--2ba2f918ceee42d8b9dfbb272b2faf13.nii.gz/MD5E-s126279--2ba2f918ceee42d8b9dfbb272b2faf13.nii.gz

BNU_1/sub-0025894/ses-1/mri/m0wp1sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qZ/VX/MD5E-s2578359--8fe94fd46501a6c18ea33af31a53bed5.nii.gz/MD5E-s2578359--8fe94fd46501a6c18ea33af31a53bed5.nii.gz

BNU_1/sub-0025894/ses-1/mri/m0wp2sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/8P/MD5E-s2267272--cccf955885a653fbf9670778bedb896a.nii.gz/MD5E-s2267272--cccf955885a653fbf9670778bedb896a.nii.gz

BNU_1/sub-0025894/ses-1/mri/m0wp3sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/0V/MD5E-s2429196--be47eefb82b7e3895ef00902f52eb892.nii.gz/MD5E-s2429196--be47eefb82b7e3895ef00902f52eb892.nii.gz

BNU_1/sub-0025894/ses-1/mri/mori_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025894/ses-1/mri/mori_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/0F/MD5E-s147071--1b762b23841a070c111d866da8390322.nii.gz/MD5E-s147071--1b762b23841a070c111d866da8390322.nii.gz

BNU_1/sub-0025894/ses-1/mri/mwp1sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/GX/MD5E-s2584211--7be00e5f68af75dfe5d276eeaaa15c94.nii.gz/MD5E-s2584211--7be00e5f68af75dfe5d276eeaaa15c94.nii.gz

BNU_1/sub-0025894/ses-1/mri/mwp2sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/K9/MD5E-s2267434--34d245a1cf9d92c4f1d98bd66c99a18d.nii.gz/MD5E-s2267434--34d245a1cf9d92c4f1d98bd66c99a18d.nii.gz

BNU_1/sub-0025894/ses-1/mri/mwp3sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/w9/MD5E-s2426227--24e912e94710f7361957d5b0df2d3ef8.nii.gz/MD5E-s2426227--24e912e94710f7361957d5b0df2d3ef8.nii.gz

BNU_1/sub-0025894/ses-1/mri/neuromorphometrics_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025894/ses-1/mri/neuromorphometrics_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/m4/MD5E-s175069--e5de1b814401f5b0b5bf2782a7cfa150.nii.gz/MD5E-s175069--e5de1b814401f5b0b5bf2782a7cfa150.nii.gz

BNU_1/sub-0025894/ses-1/mri/p0sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/K3/MD5E-s707091--a3a9282092e697541fd6613837064fc6.nii.gz/MD5E-s707091--a3a9282092e697541fd6613837064fc6.nii.gz

BNU_1/sub-0025894/ses-1/mri/p1sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/3Z/MD5E-s723080--ec2ed2b8211ac1508bb61c1359f1ebab.nii.gz/MD5E-s723080--ec2ed2b8211ac1508bb61c1359f1ebab.nii.gz

BNU_1/sub-0025894/ses-1/mri/p2sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/QZ/MD5E-s493838--1fbdc71328894acf450a67f99b57699a.nii.gz/MD5E-s493838--1fbdc71328894acf450a67f99b57699a.nii.gz

BNU_1/sub-0025894/ses-1/mri/p3sub-0025894_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025894/ses-1/mri/rp1sub-0025894_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zf/V7/MD5E-s437968--84501995b4b3b4bc129f4dcb9912adf5.nii.gz/MD5E-s437968--84501995b4b3b4bc129f4dcb9912adf5.nii.gz

BNU_1/sub-0025894/ses-1/mri/rp2sub-0025894_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025894/ses-1/mri/rp3sub-0025894_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025894/ses-1/mri/t_sub-0025894_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025894/ses-1/mri/t_sub-0025894_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/P3/MD5E-s283--7034ef4f15bb869de75d3dfaa2f0adb3.mat/MD5E-s283--7034ef4f15bb869de75d3dfaa2f0adb3.mat

BNU_1/sub-0025894/ses-1/mri/thalamus_sub-0025894_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025894/ses-1/mri/thalamus_sub-0025894_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025894/ses-1/mri/wj_sub-0025894_ses-1_run-1_T1w.nii.gz

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