[DATALAD RUNCMD] Compute UWM/sub-0027269/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/UWM/sub-0027269/ses-1/anat/sub-0027269_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "UWM/sub-0027269/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UWM/sub-0027269/ses-1/label/catROI_sub-0027269_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/Xw/MD5E-s57988--6d56ef8be595883e6e7f77b130f07141.mat/MD5E-s57988--6d56ef8be595883e6e7f77b130f07141.mat

UWM/sub-0027269/ses-1/label/catROI_sub-0027269_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/K1/MD5E-s188910--5e10e8665461060ec43933fac16fad2f.xml/MD5E-s188910--5e10e8665461060ec43933fac16fad2f.xml

UWM/sub-0027269/ses-1/label/catROIs_sub-0027269_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/J6/MD5E-s120121--f26724af419cb1c8bbb9b161be5d97ff.mat/MD5E-s120121--f26724af419cb1c8bbb9b161be5d97ff.mat

UWM/sub-0027269/ses-1/label/catROIs_sub-0027269_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/J7/MD5E-s332118--5df77c0b4ce363399a9269890c85686f.xml/MD5E-s332118--5df77c0b4ce363399a9269890c85686f.xml

UWM/sub-0027269/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UWM/sub-0027269/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/3q/MD5E-s184292--5156555c58bf82bbf07140223fca3f88.nii.gz/MD5E-s184292--5156555c58bf82bbf07140223fca3f88.nii.gz

UWM/sub-0027269/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UWM/sub-0027269/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/kx/MD5E-s206945--091a69fa63d478cbaacdd1279e3c4f80.nii.gz/MD5E-s206945--091a69fa63d478cbaacdd1279e3c4f80.nii.gz

UWM/sub-0027269/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UWM/sub-0027269/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/3q/MD5E-s261203--55489680eeaa8609697e7317d3d2dc9e.nii.gz/MD5E-s261203--55489680eeaa8609697e7317d3d2dc9e.nii.gz

UWM/sub-0027269/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UWM/sub-0027269/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/3m/MD5E-s289807--858d4eb9806240015ccd9ede371dc588.nii.gz/MD5E-s289807--858d4eb9806240015ccd9ede371dc588.nii.gz

UWM/sub-0027269/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UWM/sub-0027269/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/07/MD5E-s23748--fd47c1957a2af306cb6704a817714601.nii.gz/MD5E-s23748--fd47c1957a2af306cb6704a817714601.nii.gz

UWM/sub-0027269/ses-1/mri/aal3_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UWM/sub-0027269/ses-1/mri/aal3_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/8q/MD5E-s208306--4de26e8da5ecd9ab8b76aa6d72487792.nii.gz/MD5E-s208306--4de26e8da5ecd9ab8b76aa6d72487792.nii.gz

UWM/sub-0027269/ses-1/mri/anatomy3_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UWM/sub-0027269/ses-1/mri/anatomy3_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/W2/MD5E-s147496--6178ea0803dd99ce83d9b4cc89ad48bc.nii.gz/MD5E-s147496--6178ea0803dd99ce83d9b4cc89ad48bc.nii.gz

UWM/sub-0027269/ses-1/mri/anon_misub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/gw/MD5E-s4297135--9017c01fac9f972daeb9087da8833b24.nii.gz/MD5E-s4297135--9017c01fac9f972daeb9087da8833b24.nii.gz

UWM/sub-0027269/ses-1/mri/anon_msub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/95/MD5E-s10151574--849b8d0cebed36f0ce5a7d6d1567a807.nii.gz/MD5E-s10151574--849b8d0cebed36f0ce5a7d6d1567a807.nii.gz

UWM/sub-0027269/ses-1/mri/cat_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/56/MD5E-s107566--43ad93dcf1a37c1105d1f7a514d1078c.nii.gz/MD5E-s107566--43ad93dcf1a37c1105d1f7a514d1078c.nii.gz

UWM/sub-0027269/ses-1/mri/cobra_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UWM/sub-0027269/ses-1/mri/cobra_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/q8/MD5E-s51544--728d88987fb89331200716826d20bd94.nii.gz/MD5E-s51544--728d88987fb89331200716826d20bd94.nii.gz

UWM/sub-0027269/ses-1/mri/hammers_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UWM/sub-0027269/ses-1/mri/hammers_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/Q4/MD5E-s161551--5d307fd02869d89d3268f903bb8942f2.nii.gz/MD5E-s161551--5d307fd02869d89d3268f903bb8942f2.nii.gz

UWM/sub-0027269/ses-1/mri/ibsr_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UWM/sub-0027269/ses-1/mri/ibsr_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/Jw/MD5E-s168471--b5dbc5a91354f1ea3754677b5d1db58f.nii.gz/MD5E-s168471--b5dbc5a91354f1ea3754677b5d1db58f.nii.gz

UWM/sub-0027269/ses-1/mri/it_sub-0027269_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/jM/MD5E-s283--1f69322d3c3dac677e5b371b764ef4e6.mat/MD5E-s283--1f69322d3c3dac677e5b371b764ef4e6.mat

UWM/sub-0027269/ses-1/mri/it_sub-0027269_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/16/MD5E-s282--c9f69d83d03864f74d79ed6951ce83a8.mat/MD5E-s282--c9f69d83d03864f74d79ed6951ce83a8.mat

UWM/sub-0027269/ses-1/mri/iy_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/K0/MD5E-s46929805--643c27e22f9dde02ce136f28321a0fdb.nii.gz/MD5E-s46929805--643c27e22f9dde02ce136f28321a0fdb.nii.gz

UWM/sub-0027269/ses-1/mri/julichbrain_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UWM/sub-0027269/ses-1/mri/julichbrain_sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027269/ses-1/mri/lpba40_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027269/ses-1/mri/lpba40_sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/m0wp1sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/m0wp2sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/m0wp3sub-0027269_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027269/ses-1/mri/mori_sub-0027269_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027269/ses-1/mri/mori_sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/mwp1sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/mwp2sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/mwp3sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/neuromorphometrics_sub-0027269_ses-1_run-1_T1w.csv

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UWM/sub-0027269/ses-1/mri/neuromorphometrics_sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/p0sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/p1sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/p2sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/p3sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/rp1sub-0027269_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027269/ses-1/mri/rp2sub-0027269_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027269/ses-1/mri/rp3sub-0027269_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027269/ses-1/mri/t_sub-0027269_ses-1_run-1_T1w_affine_reorient.mat

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UWM/sub-0027269/ses-1/mri/t_sub-0027269_ses-1_run-1_T1w_rigid_reorient.mat

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UWM/sub-0027269/ses-1/mri/thalamus_sub-0027269_ses-1_run-1_T1w.csv

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UWM/sub-0027269/ses-1/mri/thalamus_sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/wj_sub-0027269_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027269/ses-1/mri/wmisub-0027269_ses-1_run-1_T1w.nii.gz

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