[DATALAD RUNCMD] Compute MRN/sub-0027035/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027035/ses-2/anat/sub-0027035_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027035/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027035/ses-2/label/catROI_sub-0027035_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x8/4Q/MD5E-s61289--99a595b2437b9ea0bf85cecbfc69cd26.mat/MD5E-s61289--99a595b2437b9ea0bf85cecbfc69cd26.mat

MRN/sub-0027035/ses-2/label/catROI_sub-0027035_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/gv/MD5E-s189185--8143ab79164be906e83f8ab53cd4c474.xml/MD5E-s189185--8143ab79164be906e83f8ab53cd4c474.xml

MRN/sub-0027035/ses-2/label/catROIs_sub-0027035_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/89/MD5E-s120103--c3cc481a7a703f15bef98157c2d2bb1c.mat/MD5E-s120103--c3cc481a7a703f15bef98157c2d2bb1c.mat

MRN/sub-0027035/ses-2/label/catROIs_sub-0027035_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/jm/MD5E-s332134--364aa5378a59e6844655b589842c65f5.xml/MD5E-s332134--364aa5378a59e6844655b589842c65f5.xml

MRN/sub-0027035/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027035/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/0k/MD5E-s165751--604b04d9b80e7b7d750cf2ef0f47afcb.nii.gz/MD5E-s165751--604b04d9b80e7b7d750cf2ef0f47afcb.nii.gz

MRN/sub-0027035/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027035/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/wz/MD5E-s185131--421986b1827155ef0965bc9ddf0849ce.nii.gz/MD5E-s185131--421986b1827155ef0965bc9ddf0849ce.nii.gz

MRN/sub-0027035/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027035/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kj/WX/MD5E-s246959--228db6f5611b0320fe15456b243c28fe.nii.gz/MD5E-s246959--228db6f5611b0320fe15456b243c28fe.nii.gz

MRN/sub-0027035/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027035/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/w8/MD5E-s275195--965f74a6059a23e9e5f52d33d76185f1.nii.gz/MD5E-s275195--965f74a6059a23e9e5f52d33d76185f1.nii.gz

MRN/sub-0027035/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027035/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/90/MD5E-s25606--f529c8e7d9021cc77ea7efadb31aedd6.nii.gz/MD5E-s25606--f529c8e7d9021cc77ea7efadb31aedd6.nii.gz

MRN/sub-0027035/ses-2/mri/aal3_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MRN/sub-0027035/ses-2/mri/aal3_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/gQ/MD5E-s187471--23719c8e5599bbd16eb781f80aecb41c.nii.gz/MD5E-s187471--23719c8e5599bbd16eb781f80aecb41c.nii.gz

MRN/sub-0027035/ses-2/mri/anatomy3_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027035/ses-2/mri/anatomy3_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/Q2/MD5E-s135881--107049a5fd8f2bc994a0670815d825a7.nii.gz/MD5E-s135881--107049a5fd8f2bc994a0670815d825a7.nii.gz

MRN/sub-0027035/ses-2/mri/anon_misub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MV/4p/MD5E-s9467771--9001d60e56ed317618dca0251d77879b.nii.gz/MD5E-s9467771--9001d60e56ed317618dca0251d77879b.nii.gz

MRN/sub-0027035/ses-2/mri/anon_msub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/vx/MD5E-s10589916--4a78a5825615420e3af76063f527265a.nii.gz/MD5E-s10589916--4a78a5825615420e3af76063f527265a.nii.gz

MRN/sub-0027035/ses-2/mri/cat_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/G8/MD5E-s99070--6137abf987f7fa6962d3f40c109c7643.nii.gz/MD5E-s99070--6137abf987f7fa6962d3f40c109c7643.nii.gz

MRN/sub-0027035/ses-2/mri/cobra_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027035/ses-2/mri/cobra_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/88/MD5E-s48372--aac4b1f145d376deb5da900151afedfc.nii.gz/MD5E-s48372--aac4b1f145d376deb5da900151afedfc.nii.gz

MRN/sub-0027035/ses-2/mri/hammers_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027035/ses-2/mri/hammers_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/8Z/MD5E-s146297--6b5538e981dcb5d95debd291133a370f.nii.gz/MD5E-s146297--6b5538e981dcb5d95debd291133a370f.nii.gz

MRN/sub-0027035/ses-2/mri/ibsr_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027035/ses-2/mri/ibsr_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/4M/MD5E-s155902--484485148eb5b7c0f324a45487799bde.nii.gz/MD5E-s155902--484485148eb5b7c0f324a45487799bde.nii.gz

MRN/sub-0027035/ses-2/mri/it_sub-0027035_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/KQ/MD5E-s283--2231043bd0f27d44d2d2c813b1a9e41b.mat/MD5E-s283--2231043bd0f27d44d2d2c813b1a9e41b.mat

MRN/sub-0027035/ses-2/mri/it_sub-0027035_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/1X/MD5E-s283--aff45ab7eb0d8d88beff1e5f7b67541a.mat/MD5E-s283--aff45ab7eb0d8d88beff1e5f7b67541a.mat

MRN/sub-0027035/ses-2/mri/iy_sub-0027035_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/4p/MD5E-s44685692--ec815bab842d965a234f337770bd9ea3.nii.gz/MD5E-s44685692--ec815bab842d965a234f337770bd9ea3.nii.gz

MRN/sub-0027035/ses-2/mri/julichbrain_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MRN/sub-0027035/ses-2/mri/julichbrain_sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/lpba40_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027035/ses-2/mri/lpba40_sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/m0wp1sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/m0wp2sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/m0wp3sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/mori_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MRN/sub-0027035/ses-2/mri/mori_sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/mwp1sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/mwp2sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/mwp3sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/neuromorphometrics_sub-0027035_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027035/ses-2/mri/neuromorphometrics_sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/p0sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/p1sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/p2sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/p3sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/rp1sub-0027035_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027035/ses-2/mri/rp2sub-0027035_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027035/ses-2/mri/rp3sub-0027035_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027035/ses-2/mri/t_sub-0027035_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027035/ses-2/mri/t_sub-0027035_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027035/ses-2/mri/thalamus_sub-0027035_ses-2_run-1_T1w.csv

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MRN/sub-0027035/ses-2/mri/thalamus_sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/wj_sub-0027035_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027035/ses-2/mri/wmisub-0027035_ses-2_run-1_T1w.nii.gz

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