[DATALAD RUNCMD] Compute UWM/sub-0027274/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/UWM/sub-0027274/ses-1/anat/sub-0027274_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "UWM/sub-0027274/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UWM/sub-0027274/ses-1/label/catROI_sub-0027274_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/XX/MD5E-s58384--bdb5f05f9b4dcf1e91d2ee72173fb689.mat/MD5E-s58384--bdb5f05f9b4dcf1e91d2ee72173fb689.mat

UWM/sub-0027274/ses-1/label/catROI_sub-0027274_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/zW/MD5E-s188399--cf550b959790e8c98bf4fabb58e3ef29.xml/MD5E-s188399--cf550b959790e8c98bf4fabb58e3ef29.xml

UWM/sub-0027274/ses-1/label/catROIs_sub-0027274_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/g8/MD5E-s119959--5894facf8be2b55e973da4a26de01163.mat/MD5E-s119959--5894facf8be2b55e973da4a26de01163.mat

UWM/sub-0027274/ses-1/label/catROIs_sub-0027274_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/36/MD5E-s332154--c06e5d1ebbedd34e33ede27f431774eb.xml/MD5E-s332154--c06e5d1ebbedd34e33ede27f431774eb.xml

UWM/sub-0027274/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UWM/sub-0027274/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/fg/MD5E-s213730--9b202cca6a2bee680a30c744b01f13fe.nii.gz/MD5E-s213730--9b202cca6a2bee680a30c744b01f13fe.nii.gz

UWM/sub-0027274/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UWM/sub-0027274/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/w1/MD5E-s240440--d1596bf551fa818857a6847e589a8e7a.nii.gz/MD5E-s240440--d1596bf551fa818857a6847e589a8e7a.nii.gz

UWM/sub-0027274/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UWM/sub-0027274/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z5/Zq/MD5E-s301913--8d1c83527c4233194999857d73b98f3e.nii.gz/MD5E-s301913--8d1c83527c4233194999857d73b98f3e.nii.gz

UWM/sub-0027274/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UWM/sub-0027274/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/47/MD5E-s336017--94fe8c99039fe7dcd9ef7f68a91d8d06.nii.gz/MD5E-s336017--94fe8c99039fe7dcd9ef7f68a91d8d06.nii.gz

UWM/sub-0027274/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UWM/sub-0027274/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZF/8Z/MD5E-s25399--8f62dd273f8b92411ebe868a589789ec.nii.gz/MD5E-s25399--8f62dd273f8b92411ebe868a589789ec.nii.gz

UWM/sub-0027274/ses-1/mri/aal3_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UWM/sub-0027274/ses-1/mri/aal3_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W1/xP/MD5E-s240276--938d5e321e28bb85dc95209510462946.nii.gz/MD5E-s240276--938d5e321e28bb85dc95209510462946.nii.gz

UWM/sub-0027274/ses-1/mri/anatomy3_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UWM/sub-0027274/ses-1/mri/anatomy3_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/X8/MD5E-s172752--ef074f2d01b8f80657553e7b2b4befaf.nii.gz/MD5E-s172752--ef074f2d01b8f80657553e7b2b4befaf.nii.gz

UWM/sub-0027274/ses-1/mri/anon_misub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/Jg/MD5E-s5213294--e671f588cd58fb347ca968a237708faa.nii.gz/MD5E-s5213294--e671f588cd58fb347ca968a237708faa.nii.gz

UWM/sub-0027274/ses-1/mri/anon_msub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/xp/MD5E-s11121251--b1b49b4e7735823d0ec7384771026505.nii.gz/MD5E-s11121251--b1b49b4e7735823d0ec7384771026505.nii.gz

UWM/sub-0027274/ses-1/mri/cat_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/65/MD5E-s122918--13960ab1997ca0959007fdc9f492d830.nii.gz/MD5E-s122918--13960ab1997ca0959007fdc9f492d830.nii.gz

UWM/sub-0027274/ses-1/mri/cobra_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UWM/sub-0027274/ses-1/mri/cobra_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mG/23/MD5E-s56197--40a3b316f41a5a4de9dcd52f8c0c820a.nii.gz/MD5E-s56197--40a3b316f41a5a4de9dcd52f8c0c820a.nii.gz

UWM/sub-0027274/ses-1/mri/hammers_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UWM/sub-0027274/ses-1/mri/hammers_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8j/4q/MD5E-s186075--6ed942e78b036d6d4a1cb6e20a5dadb2.nii.gz/MD5E-s186075--6ed942e78b036d6d4a1cb6e20a5dadb2.nii.gz

UWM/sub-0027274/ses-1/mri/ibsr_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UWM/sub-0027274/ses-1/mri/ibsr_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/qg/MD5E-s193765--555df31208ae7d40d5514a33b32fd9fa.nii.gz/MD5E-s193765--555df31208ae7d40d5514a33b32fd9fa.nii.gz

UWM/sub-0027274/ses-1/mri/it_sub-0027274_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/VZ/MD5E-s284--297129aa273e807842cfdbd654a69bbe.mat/MD5E-s284--297129aa273e807842cfdbd654a69bbe.mat

UWM/sub-0027274/ses-1/mri/it_sub-0027274_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/x7/MD5E-s283--e2ea9f6191d4a5a21f830b3aaf15071b.mat/MD5E-s283--e2ea9f6191d4a5a21f830b3aaf15071b.mat

UWM/sub-0027274/ses-1/mri/iy_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/p0/MD5E-s53645069--085745fc5c9db5e528e152178a7025c2.nii.gz/MD5E-s53645069--085745fc5c9db5e528e152178a7025c2.nii.gz

UWM/sub-0027274/ses-1/mri/julichbrain_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UWM/sub-0027274/ses-1/mri/julichbrain_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/lpba40_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UWM/sub-0027274/ses-1/mri/lpba40_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/39/z4/MD5E-s184291--530f2584e15f7e357c07ed340c43fa23.nii.gz/MD5E-s184291--530f2584e15f7e357c07ed340c43fa23.nii.gz

UWM/sub-0027274/ses-1/mri/m0wp1sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/m0wp2sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/m0wp3sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/mP/MD5E-s2487313--77831afecb087fc4f575965c07d70d74.nii.gz/MD5E-s2487313--77831afecb087fc4f575965c07d70d74.nii.gz

UWM/sub-0027274/ses-1/mri/mori_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

UWM/sub-0027274/ses-1/mri/mori_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/mwp1sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/mwp2sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/mwp3sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/neuromorphometrics_sub-0027274_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/neuromorphometrics_sub-0027274_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027274/ses-1/mri/p0sub-0027274_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027274/ses-1/mri/p1sub-0027274_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027274/ses-1/mri/p2sub-0027274_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027274/ses-1/mri/p3sub-0027274_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027274/ses-1/mri/rp1sub-0027274_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027274/ses-1/mri/rp2sub-0027274_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027274/ses-1/mri/rp3sub-0027274_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027274/ses-1/mri/t_sub-0027274_ses-1_run-1_T1w_affine_reorient.mat

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UWM/sub-0027274/ses-1/mri/t_sub-0027274_ses-1_run-1_T1w_rigid_reorient.mat

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UWM/sub-0027274/ses-1/mri/thalamus_sub-0027274_ses-1_run-1_T1w.csv

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UWM/sub-0027274/ses-1/mri/thalamus_sub-0027274_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027274/ses-1/mri/wj_sub-0027274_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027274/ses-1/mri/wmisub-0027274_ses-1_run-1_T1w.nii.gz

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