[DATALAD RUNCMD] Compute SWU_4/sub-0025715/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025715/ses-1/anat/sub-0025715_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025715/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025715/ses-1/label/catROI_sub-0025715_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/1q/MD5E-s57731--f55bd6db8437630aec9e478c3bde88bb.mat/MD5E-s57731--f55bd6db8437630aec9e478c3bde88bb.mat

SWU_4/sub-0025715/ses-1/label/catROI_sub-0025715_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/QG/MD5E-s188603--dda355e005bb939079f72292fc32ea13.xml/MD5E-s188603--dda355e005bb939079f72292fc32ea13.xml

SWU_4/sub-0025715/ses-1/label/catROIs_sub-0025715_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jf/M9/MD5E-s120037--9256a2cd028a47df512235cb52ede584.mat/MD5E-s120037--9256a2cd028a47df512235cb52ede584.mat

SWU_4/sub-0025715/ses-1/label/catROIs_sub-0025715_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/G3/MD5E-s332136--c78fd488a4ed8090b9cb63eedd792d2b.xml/MD5E-s332136--c78fd488a4ed8090b9cb63eedd792d2b.xml

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/92/MD5E-s165272--49836d2aa5f335ee3b1a93d629d8d598.nii.gz/MD5E-s165272--49836d2aa5f335ee3b1a93d629d8d598.nii.gz

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/Xg/MD5E-s184856--a025e157c99baea794610eed359899c9.nii.gz/MD5E-s184856--a025e157c99baea794610eed359899c9.nii.gz

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/4Z/MD5E-s249345--d3d65a6878c04705d8ff6c2c8544d36e.nii.gz/MD5E-s249345--d3d65a6878c04705d8ff6c2c8544d36e.nii.gz

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025715/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/G9/MD5E-s276577--4f2b2f9b60a24a8f5683eba46fa2c73c.nii.gz/MD5E-s276577--4f2b2f9b60a24a8f5683eba46fa2c73c.nii.gz

SWU_4/sub-0025715/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025715/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/GV/MD5E-s24634--f90b554b19745457e87e3a931a193b5e.nii.gz/MD5E-s24634--f90b554b19745457e87e3a931a193b5e.nii.gz

SWU_4/sub-0025715/ses-1/mri/aal3_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025715/ses-1/mri/aal3_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/mM/MD5E-s186809--84185a21eeaf665c7f6c031718d5fcaf.nii.gz/MD5E-s186809--84185a21eeaf665c7f6c031718d5fcaf.nii.gz

SWU_4/sub-0025715/ses-1/mri/anatomy3_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025715/ses-1/mri/anatomy3_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/q6/MD5E-s134878--849c9f9751b0bfbf902669124d8be6cf.nii.gz/MD5E-s134878--849c9f9751b0bfbf902669124d8be6cf.nii.gz

SWU_4/sub-0025715/ses-1/mri/anon_misub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/w7/MD5E-s8317958--e06488827b8513e860d6073417dbe1d1.nii.gz/MD5E-s8317958--e06488827b8513e860d6073417dbe1d1.nii.gz

SWU_4/sub-0025715/ses-1/mri/anon_msub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/2j/MD5E-s8245158--82947a5f41890b14f5400d9b1d9dc3b9.nii.gz/MD5E-s8245158--82947a5f41890b14f5400d9b1d9dc3b9.nii.gz

SWU_4/sub-0025715/ses-1/mri/cat_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/95/MD5E-s99078--12da5d52fcc439e350bb61e7598c1e85.nii.gz/MD5E-s99078--12da5d52fcc439e350bb61e7598c1e85.nii.gz

SWU_4/sub-0025715/ses-1/mri/cobra_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025715/ses-1/mri/cobra_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/9p/MD5E-s49264--4ef48c049beed71cbb4a971342d34ef8.nii.gz/MD5E-s49264--4ef48c049beed71cbb4a971342d34ef8.nii.gz

SWU_4/sub-0025715/ses-1/mri/hammers_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025715/ses-1/mri/hammers_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/Fm/MD5E-s146703--958ca8a263bd6f6f0bfd31366239b94f.nii.gz/MD5E-s146703--958ca8a263bd6f6f0bfd31366239b94f.nii.gz

SWU_4/sub-0025715/ses-1/mri/ibsr_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025715/ses-1/mri/ibsr_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/q0/MD5E-s155643--67c12b75ef9ad3ca4017488f665e5b49.nii.gz/MD5E-s155643--67c12b75ef9ad3ca4017488f665e5b49.nii.gz

SWU_4/sub-0025715/ses-1/mri/it_sub-0025715_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/f3/MD5E-s284--05aeb52c050b1dbaf38428655ce464e7.mat/MD5E-s284--05aeb52c050b1dbaf38428655ce464e7.mat

SWU_4/sub-0025715/ses-1/mri/it_sub-0025715_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/6Q/MD5E-s284--7fbdf8f2a6176a3503bead0b550489ec.mat/MD5E-s284--7fbdf8f2a6176a3503bead0b550489ec.mat

SWU_4/sub-0025715/ses-1/mri/iy_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/Mf/MD5E-s45301235--5ca585754d5fe4d08b0e080f4536c398.nii.gz/MD5E-s45301235--5ca585754d5fe4d08b0e080f4536c398.nii.gz

SWU_4/sub-0025715/ses-1/mri/julichbrain_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025715/ses-1/mri/julichbrain_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/v2/MD5E-s196751--fe84a01fc9202a8c80c276628e7f46fb.nii.gz/MD5E-s196751--fe84a01fc9202a8c80c276628e7f46fb.nii.gz

SWU_4/sub-0025715/ses-1/mri/lpba40_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025715/ses-1/mri/lpba40_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kz/0z/MD5E-s143239--1279e55d70b630a8c7fa3693d5fd9203.nii.gz/MD5E-s143239--1279e55d70b630a8c7fa3693d5fd9203.nii.gz

SWU_4/sub-0025715/ses-1/mri/m0wp1sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0g/m0/MD5E-s2576198--611e8308b4957a318292660167772aad.nii.gz/MD5E-s2576198--611e8308b4957a318292660167772aad.nii.gz

SWU_4/sub-0025715/ses-1/mri/m0wp2sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/5K/MD5E-s2313647--00c05c88363452ef4d5c6c594b405b3d.nii.gz/MD5E-s2313647--00c05c88363452ef4d5c6c594b405b3d.nii.gz

SWU_4/sub-0025715/ses-1/mri/m0wp3sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/52/8Q/MD5E-s2491014--135ec5f95c6576bf20e1eb0b166f0195.nii.gz/MD5E-s2491014--135ec5f95c6576bf20e1eb0b166f0195.nii.gz

SWU_4/sub-0025715/ses-1/mri/mori_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025715/ses-1/mri/mori_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/V2/MD5E-s173621--b6d2a140d46980b0ca12c9b0338ccc1b.nii.gz/MD5E-s173621--b6d2a140d46980b0ca12c9b0338ccc1b.nii.gz

SWU_4/sub-0025715/ses-1/mri/mwp1sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xM/xf/MD5E-s2580485--183053f0e4e4f617a1b75cd797821730.nii.gz/MD5E-s2580485--183053f0e4e4f617a1b75cd797821730.nii.gz

SWU_4/sub-0025715/ses-1/mri/mwp2sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/fx/MD5E-s2313855--a56a50d2f1ef69414eff0b8e48b92d8b.nii.gz/MD5E-s2313855--a56a50d2f1ef69414eff0b8e48b92d8b.nii.gz

SWU_4/sub-0025715/ses-1/mri/mwp3sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025715/ses-1/mri/neuromorphometrics_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025715/ses-1/mri/neuromorphometrics_sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/38/MD5E-s200149--6aeb53d7b48cf8ce9160a7b6445fdb0f.nii.gz/MD5E-s200149--6aeb53d7b48cf8ce9160a7b6445fdb0f.nii.gz

SWU_4/sub-0025715/ses-1/mri/p0sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/Pp/MD5E-s642130--cd690c4805d7d761ccb1bcda1b858311.nii.gz/MD5E-s642130--cd690c4805d7d761ccb1bcda1b858311.nii.gz

SWU_4/sub-0025715/ses-1/mri/p1sub-0025715_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/4G/GG/MD5E-s683675--e19bc2ca5620d70ee9747d7c8b74c717.nii.gz/MD5E-s683675--e19bc2ca5620d70ee9747d7c8b74c717.nii.gz

SWU_4/sub-0025715/ses-1/mri/p2sub-0025715_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/7J/MD5E-s449322--d083a3eda838040430a9f8344a6005d8.nii.gz/MD5E-s449322--d083a3eda838040430a9f8344a6005d8.nii.gz

SWU_4/sub-0025715/ses-1/mri/p3sub-0025715_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025715/ses-1/mri/rp1sub-0025715_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025715/ses-1/mri/rp2sub-0025715_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025715/ses-1/mri/rp3sub-0025715_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025715/ses-1/mri/t_sub-0025715_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/zp/MD5E-s284--299401f6d4386f9d199496d5c597d118.mat/MD5E-s284--299401f6d4386f9d199496d5c597d118.mat

SWU_4/sub-0025715/ses-1/mri/t_sub-0025715_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/w3/MD5E-s284--bd034501440c17b5f11f2d120c597a02.mat/MD5E-s284--bd034501440c17b5f11f2d120c597a02.mat

SWU_4/sub-0025715/ses-1/mri/thalamus_sub-0025715_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025715/ses-1/mri/thalamus_sub-0025715_ses-1_run-1_T1w.nii.gz

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