[DATALAD RUNCMD] Compute SWU_4/sub-0025641/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025641/ses-1/anat/sub-0025641_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025641/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025641/ses-1/label/catROI_sub-0025641_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/16/MD5E-s61268--f089aa928550b38bf4b8f8712b472789.mat/MD5E-s61268--f089aa928550b38bf4b8f8712b472789.mat

SWU_4/sub-0025641/ses-1/label/catROI_sub-0025641_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/wx/MD5E-s189029--fc3e021ecd5c130a0d0a6439c16053ec.xml/MD5E-s189029--fc3e021ecd5c130a0d0a6439c16053ec.xml

SWU_4/sub-0025641/ses-1/label/catROIs_sub-0025641_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/Qf/MD5E-s120036--a2435badb22e52f1f9e7814aa2b21f5e.mat/MD5E-s120036--a2435badb22e52f1f9e7814aa2b21f5e.mat

SWU_4/sub-0025641/ses-1/label/catROIs_sub-0025641_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/Q9/MD5E-s332110--2f49375e55d4e80c356a70f193a85071.xml/MD5E-s332110--2f49375e55d4e80c356a70f193a85071.xml

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/j9/MD5E-s157685--d08bcb619f5f8ae2f5c32fce5f953a6c.nii.gz/MD5E-s157685--d08bcb619f5f8ae2f5c32fce5f953a6c.nii.gz

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/48/MD5E-s177044--a882707e5754e4b1a3effc5134e4eccf.nii.gz/MD5E-s177044--a882707e5754e4b1a3effc5134e4eccf.nii.gz

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/G8/MD5E-s238047--c6aa337b2322c1881f7a049022153597.nii.gz/MD5E-s238047--c6aa337b2322c1881f7a049022153597.nii.gz

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025641/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/Fp/MD5E-s265502--cd70cce716f2d15cacf04c90cece3bbb.nii.gz/MD5E-s265502--cd70cce716f2d15cacf04c90cece3bbb.nii.gz

SWU_4/sub-0025641/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025641/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/vx/MD5E-s24118--f97ff0afb014d8df8ca4b102a56fd21c.nii.gz/MD5E-s24118--f97ff0afb014d8df8ca4b102a56fd21c.nii.gz

SWU_4/sub-0025641/ses-1/mri/aal3_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025641/ses-1/mri/aal3_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/Wp/MD5E-s177040--149f54a7178e8d499a11c33dcf6b9827.nii.gz/MD5E-s177040--149f54a7178e8d499a11c33dcf6b9827.nii.gz

SWU_4/sub-0025641/ses-1/mri/anatomy3_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025641/ses-1/mri/anatomy3_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/47/7M/MD5E-s128325--fdee67d96db53185140483b06f1cb12a.nii.gz/MD5E-s128325--fdee67d96db53185140483b06f1cb12a.nii.gz

SWU_4/sub-0025641/ses-1/mri/anon_misub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/xj/MD5E-s7883404--c62b6c2f317d529072de0c73289b7df9.nii.gz/MD5E-s7883404--c62b6c2f317d529072de0c73289b7df9.nii.gz

SWU_4/sub-0025641/ses-1/mri/anon_msub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/6X/MD5E-s7419963--10384fd11bee8f20ae54d80111be5bba.nii.gz/MD5E-s7419963--10384fd11bee8f20ae54d80111be5bba.nii.gz

SWU_4/sub-0025641/ses-1/mri/cat_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/53/MD5E-s94407--323db4abf7b2b0066991b193181469e4.nii.gz/MD5E-s94407--323db4abf7b2b0066991b193181469e4.nii.gz

SWU_4/sub-0025641/ses-1/mri/cobra_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025641/ses-1/mri/cobra_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0f/6G/MD5E-s44898--67bf5228ab6f5a6d3e5b21385a2e1ad3.nii.gz/MD5E-s44898--67bf5228ab6f5a6d3e5b21385a2e1ad3.nii.gz

SWU_4/sub-0025641/ses-1/mri/hammers_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025641/ses-1/mri/hammers_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/km/MD5E-s139881--7d92f860da2ae7bb9900f0a0b24efd0e.nii.gz/MD5E-s139881--7d92f860da2ae7bb9900f0a0b24efd0e.nii.gz

SWU_4/sub-0025641/ses-1/mri/ibsr_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025641/ses-1/mri/ibsr_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V2/32/MD5E-s148082--dc184cc3e8e7a91a036afa393f35df8b.nii.gz/MD5E-s148082--dc184cc3e8e7a91a036afa393f35df8b.nii.gz

SWU_4/sub-0025641/ses-1/mri/it_sub-0025641_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wm/fF/MD5E-s284--7641e138ad8ef65482fcf10919ecbada.mat/MD5E-s284--7641e138ad8ef65482fcf10919ecbada.mat

SWU_4/sub-0025641/ses-1/mri/it_sub-0025641_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/f8/MD5E-s285--e4edbcdb4e4aea1a82a17159f6edad76.mat/MD5E-s285--e4edbcdb4e4aea1a82a17159f6edad76.mat

SWU_4/sub-0025641/ses-1/mri/iy_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/1X/MD5E-s41890884--60af93a7b6fd555423b56e31122b4cc0.nii.gz/MD5E-s41890884--60af93a7b6fd555423b56e31122b4cc0.nii.gz

SWU_4/sub-0025641/ses-1/mri/julichbrain_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025641/ses-1/mri/julichbrain_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/q5/MD5E-s188314--6399de34afbd591d4508a96439d7e5a6.nii.gz/MD5E-s188314--6399de34afbd591d4508a96439d7e5a6.nii.gz

SWU_4/sub-0025641/ses-1/mri/lpba40_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025641/ses-1/mri/lpba40_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/Wk/MD5E-s137433--ccf4fe97787ad8790c13fe56b60c6fff.nii.gz/MD5E-s137433--ccf4fe97787ad8790c13fe56b60c6fff.nii.gz

SWU_4/sub-0025641/ses-1/mri/m0wp1sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/JF/MD5E-s2576198--e31d7e7fc1e5d31cd7fbe638ff8b8a03.nii.gz/MD5E-s2576198--e31d7e7fc1e5d31cd7fbe638ff8b8a03.nii.gz

SWU_4/sub-0025641/ses-1/mri/m0wp2sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/XZ/MD5E-s2303827--1dbcdca996f96531261e41279f6548d1.nii.gz/MD5E-s2303827--1dbcdca996f96531261e41279f6548d1.nii.gz

SWU_4/sub-0025641/ses-1/mri/m0wp3sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/kP/MD5E-s2463250--f163e4259c97874af3a7c4e18620ae22.nii.gz/MD5E-s2463250--f163e4259c97874af3a7c4e18620ae22.nii.gz

SWU_4/sub-0025641/ses-1/mri/mori_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025641/ses-1/mri/mori_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/j3/MD5E-s163467--edaa6267f13bb6c82964013ddd8e25ba.nii.gz/MD5E-s163467--edaa6267f13bb6c82964013ddd8e25ba.nii.gz

SWU_4/sub-0025641/ses-1/mri/mwp1sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/Kw/MD5E-s2585960--ed7de036f800a8d8c136136435f7edcd.nii.gz/MD5E-s2585960--ed7de036f800a8d8c136136435f7edcd.nii.gz

SWU_4/sub-0025641/ses-1/mri/mwp2sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/Wg/MD5E-s2306834--fbdb690c9a73592464437fdd6257749e.nii.gz/MD5E-s2306834--fbdb690c9a73592464437fdd6257749e.nii.gz

SWU_4/sub-0025641/ses-1/mri/mwp3sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025641/ses-1/mri/neuromorphometrics_sub-0025641_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025641/ses-1/mri/neuromorphometrics_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025641/ses-1/mri/p0sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zf/V3/MD5E-s577611--6d2495414c3540375f46922ccd432a3a.nii.gz/MD5E-s577611--6d2495414c3540375f46922ccd432a3a.nii.gz

SWU_4/sub-0025641/ses-1/mri/p1sub-0025641_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025641/ses-1/mri/p2sub-0025641_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025641/ses-1/mri/p3sub-0025641_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025641/ses-1/mri/rp1sub-0025641_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025641/ses-1/mri/rp2sub-0025641_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025641/ses-1/mri/rp3sub-0025641_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025641/ses-1/mri/t_sub-0025641_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025641/ses-1/mri/t_sub-0025641_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025641/ses-1/mri/thalamus_sub-0025641_ses-1_run-1_T1w.csv

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SWU_4/sub-0025641/ses-1/mri/thalamus_sub-0025641_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025641/ses-1/mri/wj_sub-0025641_ses-1_run-1_T1w.nii.gz

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