[DATALAD RUNCMD] Compute SWU_4/sub-0025809/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025809/ses-1/anat/sub-0025809_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025809/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025809/ses-1/label/catROI_sub-0025809_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/6F/MD5E-s61254--b0a44949fbaa58f5a5e6ed6ada7d82d3.mat/MD5E-s61254--b0a44949fbaa58f5a5e6ed6ada7d82d3.mat

SWU_4/sub-0025809/ses-1/label/catROI_sub-0025809_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/FP/MD5E-s188847--9ab45906c5d9fe15e7903a3f927e278d.xml/MD5E-s188847--9ab45906c5d9fe15e7903a3f927e278d.xml

SWU_4/sub-0025809/ses-1/label/catROIs_sub-0025809_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/Q1/MD5E-s120141--89f009d903573ff37f1b430a94db1d1e.mat/MD5E-s120141--89f009d903573ff37f1b430a94db1d1e.mat

SWU_4/sub-0025809/ses-1/label/catROIs_sub-0025809_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/PZ/MD5E-s332188--d1bb6ee50386a6f3cf54e8a1784c2de1.xml/MD5E-s332188--d1bb6ee50386a6f3cf54e8a1784c2de1.xml

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/99/MD5E-s167081--646f14262bc78b5367df3d82108c8d8c.nii.gz/MD5E-s167081--646f14262bc78b5367df3d82108c8d8c.nii.gz

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/jF/MD5E-s186323--633dfbf19fb7d5202acb78f4faf2d25a.nii.gz/MD5E-s186323--633dfbf19fb7d5202acb78f4faf2d25a.nii.gz

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/0Z/MD5E-s252144--9f9806ed037b90e2c09d7d4a9f4bdeb9.nii.gz/MD5E-s252144--9f9806ed037b90e2c09d7d4a9f4bdeb9.nii.gz

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025809/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/XM/MD5E-s278993--eef096b185f2e2c96f57397fbc4b6b55.nii.gz/MD5E-s278993--eef096b185f2e2c96f57397fbc4b6b55.nii.gz

SWU_4/sub-0025809/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025809/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/FM/MD5E-s25333--e55fb5d895e15a9e1207c058ad410ddd.nii.gz/MD5E-s25333--e55fb5d895e15a9e1207c058ad410ddd.nii.gz

SWU_4/sub-0025809/ses-1/mri/aal3_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025809/ses-1/mri/aal3_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/zG/MD5E-s187553--bbd692e80f7493975d5e0b5037108f35.nii.gz/MD5E-s187553--bbd692e80f7493975d5e0b5037108f35.nii.gz

SWU_4/sub-0025809/ses-1/mri/anatomy3_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025809/ses-1/mri/anatomy3_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/11/MD5E-s136533--04b98bc2807744da9f321e223fc8109f.nii.gz/MD5E-s136533--04b98bc2807744da9f321e223fc8109f.nii.gz

SWU_4/sub-0025809/ses-1/mri/anon_misub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/7K/MD5E-s9332489--36a51253a31c543d6baf1aaf4f8865fb.nii.gz/MD5E-s9332489--36a51253a31c543d6baf1aaf4f8865fb.nii.gz

SWU_4/sub-0025809/ses-1/mri/anon_msub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/v6/MD5E-s10715446--32b9b2aba6556eb9c0197bb45587bd67.nii.gz/MD5E-s10715446--32b9b2aba6556eb9c0197bb45587bd67.nii.gz

SWU_4/sub-0025809/ses-1/mri/cat_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p0/z8/MD5E-s97702--608cdc9b50282cda7370c8b44f02a995.nii.gz/MD5E-s97702--608cdc9b50282cda7370c8b44f02a995.nii.gz

SWU_4/sub-0025809/ses-1/mri/cobra_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025809/ses-1/mri/cobra_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/QF/MD5E-s48378--3707524f1c117b62ffabe64a27db0bb1.nii.gz/MD5E-s48378--3707524f1c117b62ffabe64a27db0bb1.nii.gz

SWU_4/sub-0025809/ses-1/mri/hammers_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025809/ses-1/mri/hammers_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JF/94/MD5E-s148142--e78fb235d0de992ede1a0d0d16409c37.nii.gz/MD5E-s148142--e78fb235d0de992ede1a0d0d16409c37.nii.gz

SWU_4/sub-0025809/ses-1/mri/ibsr_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025809/ses-1/mri/ibsr_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/KG/MD5E-s156565--98c2ee3b06ebf2969e6f410ba9e038ea.nii.gz/MD5E-s156565--98c2ee3b06ebf2969e6f410ba9e038ea.nii.gz

SWU_4/sub-0025809/ses-1/mri/it_sub-0025809_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/55/MD5E-s283--a4d41131e3cc98990e486c9c8316151c.mat/MD5E-s283--a4d41131e3cc98990e486c9c8316151c.mat

SWU_4/sub-0025809/ses-1/mri/it_sub-0025809_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/mj/MD5E-s284--68d6d064971a2288b5b2887517a8a4d1.mat/MD5E-s284--68d6d064971a2288b5b2887517a8a4d1.mat

SWU_4/sub-0025809/ses-1/mri/iy_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/JM/MD5E-s46402523--17ae6219cd6b67d867e276475fe05f55.nii.gz/MD5E-s46402523--17ae6219cd6b67d867e276475fe05f55.nii.gz

SWU_4/sub-0025809/ses-1/mri/julichbrain_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025809/ses-1/mri/julichbrain_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/vJ/MD5E-s199231--2245529cb8f1c3210644d8cdef4d26da.nii.gz/MD5E-s199231--2245529cb8f1c3210644d8cdef4d26da.nii.gz

SWU_4/sub-0025809/ses-1/mri/lpba40_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025809/ses-1/mri/lpba40_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/Gm/MD5E-s143968--171957eaa94b12d9a9dcf2113ad3ba54.nii.gz/MD5E-s143968--171957eaa94b12d9a9dcf2113ad3ba54.nii.gz

SWU_4/sub-0025809/ses-1/mri/m0wp1sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/kJ/MD5E-s2564759--8c075d9510a0d3635004a1348b2fa7b2.nii.gz/MD5E-s2564759--8c075d9510a0d3635004a1348b2fa7b2.nii.gz

SWU_4/sub-0025809/ses-1/mri/m0wp2sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/9K/MD5E-s2309145--f6167ff5271225244623249202899a0f.nii.gz/MD5E-s2309145--f6167ff5271225244623249202899a0f.nii.gz

SWU_4/sub-0025809/ses-1/mri/m0wp3sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/zw/MD5E-s2481769--2a2136e460df1012be49ef0b2d15d0cf.nii.gz/MD5E-s2481769--2a2136e460df1012be49ef0b2d15d0cf.nii.gz

SWU_4/sub-0025809/ses-1/mri/mori_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025809/ses-1/mri/mori_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/71/MD5E-s175078--3db23c92ca95d2f10c265334c72e229d.nii.gz/MD5E-s175078--3db23c92ca95d2f10c265334c72e229d.nii.gz

SWU_4/sub-0025809/ses-1/mri/mwp1sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/2W/MD5E-s2568818--c8dc73fb50d7abce232bfcbfedb0a195.nii.gz/MD5E-s2568818--c8dc73fb50d7abce232bfcbfedb0a195.nii.gz

SWU_4/sub-0025809/ses-1/mri/mwp2sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/Wj/MD5E-s2305118--b64b0952dbbf78d805b926c0238e84dd.nii.gz/MD5E-s2305118--b64b0952dbbf78d805b926c0238e84dd.nii.gz

SWU_4/sub-0025809/ses-1/mri/mwp3sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/pJ/MD5E-s2479637--b33c2baa2298ec87e522ef9861587226.nii.gz/MD5E-s2479637--b33c2baa2298ec87e522ef9861587226.nii.gz

SWU_4/sub-0025809/ses-1/mri/neuromorphometrics_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025809/ses-1/mri/neuromorphometrics_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/f6/MD5E-s200853--448190d94287109bc02471093e6d2db0.nii.gz/MD5E-s200853--448190d94287109bc02471093e6d2db0.nii.gz

SWU_4/sub-0025809/ses-1/mri/p0sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z4/zM/MD5E-s630996--7afea7d098084764faa08153b9f4a1c9.nii.gz/MD5E-s630996--7afea7d098084764faa08153b9f4a1c9.nii.gz

SWU_4/sub-0025809/ses-1/mri/p1sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/XF/MD5E-s670644--b786916b1f80ce4d4afc4710b91c4574.nii.gz/MD5E-s670644--b786916b1f80ce4d4afc4710b91c4574.nii.gz

SWU_4/sub-0025809/ses-1/mri/p2sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/23/MD5E-s447163--cd46d7e1555c52607369b96003419e7d.nii.gz/MD5E-s447163--cd46d7e1555c52607369b96003419e7d.nii.gz

SWU_4/sub-0025809/ses-1/mri/p3sub-0025809_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025809/ses-1/mri/rp1sub-0025809_ses-1_run-1_T1w_affine.nii.gz

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+../../../../.git/annex/objects/P8/0W/MD5E-s450473--2cb3dd757182fb6d2f2c9039e99130d5.nii.gz/MD5E-s450473--2cb3dd757182fb6d2f2c9039e99130d5.nii.gz

SWU_4/sub-0025809/ses-1/mri/rp2sub-0025809_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025809/ses-1/mri/rp3sub-0025809_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025809/ses-1/mri/t_sub-0025809_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025809/ses-1/mri/t_sub-0025809_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/gQ/MD5E-s284--2f9fac6dfcd28622256dfc4a577acaea.mat/MD5E-s284--2f9fac6dfcd28622256dfc4a577acaea.mat

SWU_4/sub-0025809/ses-1/mri/thalamus_sub-0025809_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025809/ses-1/mri/thalamus_sub-0025809_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fj/2m/MD5E-s16501--07112328379658515152449cc7efb890.nii.gz/MD5E-s16501--07112328379658515152449cc7efb890.nii.gz

SWU_4/sub-0025809/ses-1/mri/wj_sub-0025809_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025809/ses-1/mri/wp3sub-0025809_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025809/ses-1/surf/lh.area.sub-0025809_ses-1_run-1_T1w

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SWU_4/sub-0025809/ses-1/surf/lh.central.sub-0025809_ses-1_run-1_T1w.gii

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SWU_4/sub-0025809/ses-1/surf/lh.edgemap32k.sub-0025809_ses-1_run-1_T1w.mat

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SWU_4/sub-0025809/ses-1/surf/lh.fractaldimension.sub-0025809_ses-1_run-1_T1w

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SWU_4/sub-0025809/ses-1/surf/lh.gmv.sub-0025809_ses-1_run-1_T1w

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SWU_4/sub-0025809/ses-1/surf/lh.pbt.sub-0025809_ses-1_run-1_T1w

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SWU_4/sub-0025809/ses-1/surf/lh.toroGI20mm.sub-0025809_ses-1_run-1_T1w

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SWU_4/sub-0025809/ses-1/surf/rh.edgemap32k.sub-0025809_ses-1_run-1_T1w.mat

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SWU_4/sub-0025809/ses-1/surf/rh.gmv.sub-0025809_ses-1_run-1_T1w

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