[DATALAD RUNCMD] Compute SWU_4/sub-0025658/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025658/ses-2/anat/sub-0025658_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025658/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025658/ses-2/label/catROI_sub-0025658_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VJ/z8/MD5E-s61312--8f1b4b33697b2c33bf6b79a168802a77.mat/MD5E-s61312--8f1b4b33697b2c33bf6b79a168802a77.mat

SWU_4/sub-0025658/ses-2/label/catROI_sub-0025658_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/X5/MD5E-s188704--623f227868ef7dd0a49a311ad4bd4cdb.xml/MD5E-s188704--623f227868ef7dd0a49a311ad4bd4cdb.xml

SWU_4/sub-0025658/ses-2/label/catROIs_sub-0025658_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/PZ/MD5E-s120183--ee82f3296521e3e5d78091b1ce4856c4.mat/MD5E-s120183--ee82f3296521e3e5d78091b1ce4856c4.mat

SWU_4/sub-0025658/ses-2/label/catROIs_sub-0025658_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/x3/MD5E-s332131--0a2387ae7dc474513af828181d1c9ef5.xml/MD5E-s332131--0a2387ae7dc474513af828181d1c9ef5.xml

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/xx/MD5E-s172749--78a87917d4d17d3c25a2d30e5bedee19.nii.gz/MD5E-s172749--78a87917d4d17d3c25a2d30e5bedee19.nii.gz

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/9G/MD5E-s191707--4e069c1a0c7e62f25aaf7a9357f1ea12.nii.gz/MD5E-s191707--4e069c1a0c7e62f25aaf7a9357f1ea12.nii.gz

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/p4/MD5E-s259845--ce2dc3f8422c105067748add75f47e2c.nii.gz/MD5E-s259845--ce2dc3f8422c105067748add75f47e2c.nii.gz

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025658/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/Qq/MD5E-s287898--a53b285167880634add7199183de60eb.nii.gz/MD5E-s287898--a53b285167880634add7199183de60eb.nii.gz

SWU_4/sub-0025658/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025658/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/P6/MD5E-s24939--5999a2a9274ca8bdcb97f6df7c07c7eb.nii.gz/MD5E-s24939--5999a2a9274ca8bdcb97f6df7c07c7eb.nii.gz

SWU_4/sub-0025658/ses-2/mri/aal3_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025658/ses-2/mri/aal3_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/jZ/MD5E-s193166--949ea73e73b6f11929e4240bf90d58e9.nii.gz/MD5E-s193166--949ea73e73b6f11929e4240bf90d58e9.nii.gz

SWU_4/sub-0025658/ses-2/mri/anatomy3_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025658/ses-2/mri/anatomy3_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/Jq/MD5E-s140533--10699b59159cf2e3353c2d91f1ef6d2f.nii.gz/MD5E-s140533--10699b59159cf2e3353c2d91f1ef6d2f.nii.gz

SWU_4/sub-0025658/ses-2/mri/anon_misub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/wF/MD5E-s9413242--42c89e4db345467c3008e8a22a63bd89.nii.gz/MD5E-s9413242--42c89e4db345467c3008e8a22a63bd89.nii.gz

SWU_4/sub-0025658/ses-2/mri/anon_msub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/M6/MD5E-s10801471--6ebeac43e11ee5d18288e362b38a716a.nii.gz/MD5E-s10801471--6ebeac43e11ee5d18288e362b38a716a.nii.gz

SWU_4/sub-0025658/ses-2/mri/cat_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/p3/MD5E-s104121--faeacae3f8b7a4612d4e568153511962.nii.gz/MD5E-s104121--faeacae3f8b7a4612d4e568153511962.nii.gz

SWU_4/sub-0025658/ses-2/mri/cobra_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025658/ses-2/mri/cobra_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/gM/MD5E-s50396--959544c6e639b5a9f5a2358a04171197.nii.gz/MD5E-s50396--959544c6e639b5a9f5a2358a04171197.nii.gz

SWU_4/sub-0025658/ses-2/mri/hammers_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025658/ses-2/mri/hammers_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/2v/MD5E-s152058--334e2efefc835a2ff2601971d853b143.nii.gz/MD5E-s152058--334e2efefc835a2ff2601971d853b143.nii.gz

SWU_4/sub-0025658/ses-2/mri/ibsr_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025658/ses-2/mri/ibsr_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/Zf/MD5E-s160653--b6471c2f8692367eeb7221357a8c508c.nii.gz/MD5E-s160653--b6471c2f8692367eeb7221357a8c508c.nii.gz

SWU_4/sub-0025658/ses-2/mri/it_sub-0025658_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/k8/MD5E-s285--54967c293b30f9f445c6bfc6baf2b97e.mat/MD5E-s285--54967c293b30f9f445c6bfc6baf2b97e.mat

SWU_4/sub-0025658/ses-2/mri/it_sub-0025658_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/2V/MD5E-s283--45dc80e1687fad35734eaffe1c258edc.mat/MD5E-s283--45dc80e1687fad35734eaffe1c258edc.mat

SWU_4/sub-0025658/ses-2/mri/iy_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qQ/4V/MD5E-s49395552--4e2f693b48dfc4cf2c5b9e33fdd3d1ca.nii.gz/MD5E-s49395552--4e2f693b48dfc4cf2c5b9e33fdd3d1ca.nii.gz

SWU_4/sub-0025658/ses-2/mri/julichbrain_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025658/ses-2/mri/julichbrain_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/4k/MD5E-s205440--acc1065667ca5e8eeebec776ea235c38.nii.gz/MD5E-s205440--acc1065667ca5e8eeebec776ea235c38.nii.gz

SWU_4/sub-0025658/ses-2/mri/lpba40_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025658/ses-2/mri/lpba40_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/1v/MD5E-s149525--556d47f7e1bbbb82623ad9b79a9bcf53.nii.gz/MD5E-s149525--556d47f7e1bbbb82623ad9b79a9bcf53.nii.gz

SWU_4/sub-0025658/ses-2/mri/m0wp1sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/x9/MD5E-s2562946--b55adf12ea4dc79679dda2177b4bd560.nii.gz/MD5E-s2562946--b55adf12ea4dc79679dda2177b4bd560.nii.gz

SWU_4/sub-0025658/ses-2/mri/m0wp2sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xg/F3/MD5E-s2296229--82ae94b7d708f1f0d3579fc7c2e4270a.nii.gz/MD5E-s2296229--82ae94b7d708f1f0d3579fc7c2e4270a.nii.gz

SWU_4/sub-0025658/ses-2/mri/m0wp3sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/w8/MD5E-s2546146--86aee407185ea3bf6a150b90e7055f7e.nii.gz/MD5E-s2546146--86aee407185ea3bf6a150b90e7055f7e.nii.gz

SWU_4/sub-0025658/ses-2/mri/mori_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025658/ses-2/mri/mori_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/MV/MD5E-s179385--4622398e642a7689780cb4e3094859e3.nii.gz/MD5E-s179385--4622398e642a7689780cb4e3094859e3.nii.gz

SWU_4/sub-0025658/ses-2/mri/mwp1sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/F2/MD5E-s2564759--39a18c47f54a9c47d98784bf610fab1e.nii.gz/MD5E-s2564759--39a18c47f54a9c47d98784bf610fab1e.nii.gz

SWU_4/sub-0025658/ses-2/mri/mwp2sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/Jv/MD5E-s2291360--d98d09568dbb35faf4aba54dabf54120.nii.gz/MD5E-s2291360--d98d09568dbb35faf4aba54dabf54120.nii.gz

SWU_4/sub-0025658/ses-2/mri/mwp3sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/5m/MD5E-s2545350--8e04cd172f46a014cd5c22738a5c4c68.nii.gz/MD5E-s2545350--8e04cd172f46a014cd5c22738a5c4c68.nii.gz

SWU_4/sub-0025658/ses-2/mri/neuromorphometrics_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025658/ses-2/mri/neuromorphometrics_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1f/5z/MD5E-s208462--c2fde3bed92a0d2244d8b6762866bcd7.nii.gz/MD5E-s208462--c2fde3bed92a0d2244d8b6762866bcd7.nii.gz

SWU_4/sub-0025658/ses-2/mri/p0sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/WV/MD5E-s676021--da80fb593fb97aa371a514e3f267f1da.nii.gz/MD5E-s676021--da80fb593fb97aa371a514e3f267f1da.nii.gz

SWU_4/sub-0025658/ses-2/mri/p1sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/g6/MD5E-s715842--ba67377fde693a58b0548885f4360a67.nii.gz/MD5E-s715842--ba67377fde693a58b0548885f4360a67.nii.gz

SWU_4/sub-0025658/ses-2/mri/p2sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/7j/MD5E-s470295--e697d94f7b7f122e8f3173ead5c72c5a.nii.gz/MD5E-s470295--e697d94f7b7f122e8f3173ead5c72c5a.nii.gz

SWU_4/sub-0025658/ses-2/mri/p3sub-0025658_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/6X/vJ/MD5E-s409641--c59e3740f3a79e5d769cbb1f85a044bf.nii.gz/MD5E-s409641--c59e3740f3a79e5d769cbb1f85a044bf.nii.gz

SWU_4/sub-0025658/ses-2/mri/rp1sub-0025658_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/vZ/MD5E-s442519--535c75f3d73fd01b711da1a0d251f2d2.nii.gz/MD5E-s442519--535c75f3d73fd01b711da1a0d251f2d2.nii.gz

SWU_4/sub-0025658/ses-2/mri/rp2sub-0025658_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025658/ses-2/mri/rp3sub-0025658_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025658/ses-2/mri/t_sub-0025658_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WJ/fk/MD5E-s283--929e414d9a2db0e6ba9039f5ff80e488.mat/MD5E-s283--929e414d9a2db0e6ba9039f5ff80e488.mat

SWU_4/sub-0025658/ses-2/mri/t_sub-0025658_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pg/4v/MD5E-s282--3123fca8f9e0af0649517dbff236308c.mat/MD5E-s282--3123fca8f9e0af0649517dbff236308c.mat

SWU_4/sub-0025658/ses-2/mri/thalamus_sub-0025658_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025658/ses-2/mri/thalamus_sub-0025658_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025658/ses-2/mri/wj_sub-0025658_ses-2_run-1_T1w.nii.gz

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