[DATALAD RUNCMD] Compute Utah_1/sub-0026023/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/Utah_1/sub-0026023/ses-1/anat/sub-0026023_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "Utah_1/sub-0026023/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Utah_1/sub-0026023/ses-1/label/catROI_sub-0026023_ses-1_run-1_T1w.mat

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+../../../../.git/annex/objects/gK/x6/MD5E-s61368--d58e3e053a963cb2aa3112669b8d8f2c.mat/MD5E-s61368--d58e3e053a963cb2aa3112669b8d8f2c.mat

Utah_1/sub-0026023/ses-1/label/catROI_sub-0026023_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/Kw/MD5E-s188936--26a138f2dc8059fb12a5f577f6ed7bce.xml/MD5E-s188936--26a138f2dc8059fb12a5f577f6ed7bce.xml

Utah_1/sub-0026023/ses-1/label/catROIs_sub-0026023_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/4z/MD5E-s119968--42fa365d563b222509f67ffd7d9f39f5.mat/MD5E-s119968--42fa365d563b222509f67ffd7d9f39f5.mat

Utah_1/sub-0026023/ses-1/label/catROIs_sub-0026023_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/x7/MD5E-s332130--0d66beca4e57c968030039c2e9d4126b.xml/MD5E-s332130--0d66beca4e57c968030039c2e9d4126b.xml

Utah_1/sub-0026023/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Utah_1/sub-0026023/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/MF/MD5E-s406612--4f7e79adc220cec1a40f56eeccc4b5b3.nii.gz/MD5E-s406612--4f7e79adc220cec1a40f56eeccc4b5b3.nii.gz

Utah_1/sub-0026023/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Utah_1/sub-0026023/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/zp/MD5E-s452424--ab8a236d277d5f14692cb666e64c2758.nii.gz/MD5E-s452424--ab8a236d277d5f14692cb666e64c2758.nii.gz

Utah_1/sub-0026023/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026023/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/24/MD5E-s648739--aa5a7ae0ed5510ef2b372907a9f2d347.nii.gz/MD5E-s648739--aa5a7ae0ed5510ef2b372907a9f2d347.nii.gz

Utah_1/sub-0026023/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Utah_1/sub-0026023/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qQ/K4/MD5E-s713993--135bd041bb19e26b033605e625ebe454.nii.gz/MD5E-s713993--135bd041bb19e26b033605e625ebe454.nii.gz

Utah_1/sub-0026023/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026023_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026023/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026023_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/JW/0Q/MD5E-s67531--6edb57ffd1aae0a6693241d669188aa8.nii.gz/MD5E-s67531--6edb57ffd1aae0a6693241d669188aa8.nii.gz

Utah_1/sub-0026023/ses-1/mri/aal3_sub-0026023_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Utah_1/sub-0026023/ses-1/mri/aal3_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/Mp/MD5E-s455379--6178d964b6a1fead30442667af5b68af.nii.gz/MD5E-s455379--6178d964b6a1fead30442667af5b68af.nii.gz

Utah_1/sub-0026023/ses-1/mri/anatomy3_sub-0026023_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026023/ses-1/mri/anatomy3_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/J1/MD5E-s344303--6aebcc685ec04765a7741f52080da1da.nii.gz/MD5E-s344303--6aebcc685ec04765a7741f52080da1da.nii.gz

Utah_1/sub-0026023/ses-1/mri/anon_misub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/kF/MD5E-s18573236--9ba27c2ddd5ff9c92bcf54687b4c5e1d.nii.gz/MD5E-s18573236--9ba27c2ddd5ff9c92bcf54687b4c5e1d.nii.gz

Utah_1/sub-0026023/ses-1/mri/anon_msub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/fK/MD5E-s32644973--0761308da7098a5bb72c3eea487d7272.nii.gz/MD5E-s32644973--0761308da7098a5bb72c3eea487d7272.nii.gz

Utah_1/sub-0026023/ses-1/mri/cat_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/G3/MD5E-s252982--d575a5adb136dce3b3a5c7e530f4aef9.nii.gz/MD5E-s252982--d575a5adb136dce3b3a5c7e530f4aef9.nii.gz

Utah_1/sub-0026023/ses-1/mri/cobra_sub-0026023_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Utah_1/sub-0026023/ses-1/mri/cobra_sub-0026023_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/77/MD5E-s124900--27278edfa2cccbbc991530071dfd2e79.nii.gz/MD5E-s124900--27278edfa2cccbbc991530071dfd2e79.nii.gz

Utah_1/sub-0026023/ses-1/mri/hammers_sub-0026023_ses-1_run-1_T1w.csv

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Utah_1/sub-0026023/ses-1/mri/hammers_sub-0026023_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Zx/K6/MD5E-s365699--6e23b6370a5edbb54739069c7cb4795e.nii.gz/MD5E-s365699--6e23b6370a5edbb54739069c7cb4795e.nii.gz

Utah_1/sub-0026023/ses-1/mri/ibsr_sub-0026023_ses-1_run-1_T1w.csv

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Utah_1/sub-0026023/ses-1/mri/ibsr_sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/it_sub-0026023_ses-1_run-1_T1w_affine_reorient.mat

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Utah_1/sub-0026023/ses-1/mri/it_sub-0026023_ses-1_run-1_T1w_rigid_reorient.mat

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Utah_1/sub-0026023/ses-1/mri/iy_sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/julichbrain_sub-0026023_ses-1_run-1_T1w.csv

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Utah_1/sub-0026023/ses-1/mri/julichbrain_sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/lpba40_sub-0026023_ses-1_run-1_T1w.csv

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Utah_1/sub-0026023/ses-1/mri/lpba40_sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/m0wp1sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/m0wp2sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/m0wp3sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/mori_sub-0026023_ses-1_run-1_T1w.csv

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Utah_1/sub-0026023/ses-1/mri/mori_sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/mwp1sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/mwp2sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/mwp3sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/neuromorphometrics_sub-0026023_ses-1_run-1_T1w.csv

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Utah_1/sub-0026023/ses-1/mri/neuromorphometrics_sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/p0sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/p1sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/p2sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/p3sub-0026023_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026023/ses-1/mri/rp1sub-0026023_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026023/ses-1/mri/rp2sub-0026023_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026023/ses-1/mri/rp3sub-0026023_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026023/ses-1/mri/t_sub-0026023_ses-1_run-1_T1w_affine_reorient.mat

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Utah_1/sub-0026023/ses-1/mri/t_sub-0026023_ses-1_run-1_T1w_rigid_reorient.mat

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Utah_1/sub-0026023/ses-1/mri/thalamus_sub-0026023_ses-1_run-1_T1w.csv

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Utah_1/sub-0026023/ses-1/mri/thalamus_sub-0026023_ses-1_run-1_T1w.nii.gz

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