[DATALAD RUNCMD] Compute MRN/sub-0027039/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027039/ses-2/anat/sub-0027039_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027039/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027039/ses-2/label/catROI_sub-0027039_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/M3/MD5E-s61347--8fe749a817e1106f19216978677d012d.mat/MD5E-s61347--8fe749a817e1106f19216978677d012d.mat

MRN/sub-0027039/ses-2/label/catROI_sub-0027039_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/9g/MD5E-s189562--ba2d27ea6f3c3809258864ea53d386af.xml/MD5E-s189562--ba2d27ea6f3c3809258864ea53d386af.xml

MRN/sub-0027039/ses-2/label/catROIs_sub-0027039_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PV/fX/MD5E-s120227--f7ede39bac0bca39f3c0ef793c58b994.mat/MD5E-s120227--f7ede39bac0bca39f3c0ef793c58b994.mat

MRN/sub-0027039/ses-2/label/catROIs_sub-0027039_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gW/0K/MD5E-s332125--d76908889564a4a4408b1d727e31d8ad.xml/MD5E-s332125--d76908889564a4a4408b1d727e31d8ad.xml

MRN/sub-0027039/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027039/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/jZ/MD5E-s157697--8e446fd1a7be7100721e32dcf3bec7be.nii.gz/MD5E-s157697--8e446fd1a7be7100721e32dcf3bec7be.nii.gz

MRN/sub-0027039/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027039/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/x8/MD5E-s176790--59f00ea15e7abaa8789f703816e69c4f.nii.gz/MD5E-s176790--59f00ea15e7abaa8789f703816e69c4f.nii.gz

MRN/sub-0027039/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027039/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/6m/MD5E-s234523--610d773b340c71096059551dce7f708a.nii.gz/MD5E-s234523--610d773b340c71096059551dce7f708a.nii.gz

MRN/sub-0027039/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027039/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/0k/MD5E-s260903--08666c7d365a7794e9f894869ef032af.nii.gz/MD5E-s260903--08666c7d365a7794e9f894869ef032af.nii.gz

MRN/sub-0027039/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027039/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/3q/MD5E-s24831--3fd76de952b63fb8274a117e615905bb.nii.gz/MD5E-s24831--3fd76de952b63fb8274a117e615905bb.nii.gz

MRN/sub-0027039/ses-2/mri/aal3_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MRN/sub-0027039/ses-2/mri/aal3_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/m4/MD5E-s180069--f6d34e861c0fedea72188e54d1248c63.nii.gz/MD5E-s180069--f6d34e861c0fedea72188e54d1248c63.nii.gz

MRN/sub-0027039/ses-2/mri/anatomy3_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027039/ses-2/mri/anatomy3_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/MG/MD5E-s129403--17ead0be58fc64cf1b0308e04d6b65e5.nii.gz/MD5E-s129403--17ead0be58fc64cf1b0308e04d6b65e5.nii.gz

MRN/sub-0027039/ses-2/mri/anon_misub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/4j/MD5E-s12191666--914fbbe419b6cd3dbd64518c8a6b8edc.nii.gz/MD5E-s12191666--914fbbe419b6cd3dbd64518c8a6b8edc.nii.gz

MRN/sub-0027039/ses-2/mri/anon_msub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/7M/MD5E-s13478712--17397d4d0cbe80cbfefd94952dde8ad9.nii.gz/MD5E-s13478712--17397d4d0cbe80cbfefd94952dde8ad9.nii.gz

MRN/sub-0027039/ses-2/mri/cat_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/wP/MD5E-s100275--1f76efb7a4f2a636e19541617b5ab388.nii.gz/MD5E-s100275--1f76efb7a4f2a636e19541617b5ab388.nii.gz

MRN/sub-0027039/ses-2/mri/cobra_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027039/ses-2/mri/cobra_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/5w/MD5E-s46701--3f2168865aa5486880feed04d6f5aa8e.nii.gz/MD5E-s46701--3f2168865aa5486880feed04d6f5aa8e.nii.gz

MRN/sub-0027039/ses-2/mri/hammers_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027039/ses-2/mri/hammers_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/wM/MD5E-s137920--574f66acacf71b351fc58d08a6551500.nii.gz/MD5E-s137920--574f66acacf71b351fc58d08a6551500.nii.gz

MRN/sub-0027039/ses-2/mri/ibsr_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027039/ses-2/mri/ibsr_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/Z4/MD5E-s147639--fbbce52411545941dc773053755ff6df.nii.gz/MD5E-s147639--fbbce52411545941dc773053755ff6df.nii.gz

MRN/sub-0027039/ses-2/mri/it_sub-0027039_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kF/xZ/MD5E-s284--6144ba07b4661ea84698c962cc9ab291.mat/MD5E-s284--6144ba07b4661ea84698c962cc9ab291.mat

MRN/sub-0027039/ses-2/mri/it_sub-0027039_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/Xm/MD5E-s284--a05d80de45e79dff64b7272f6151b8e0.mat/MD5E-s284--a05d80de45e79dff64b7272f6151b8e0.mat

MRN/sub-0027039/ses-2/mri/iy_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/WQ/MD5E-s40840607--12e9145d84bb3e56db3f55a0403cc658.nii.gz/MD5E-s40840607--12e9145d84bb3e56db3f55a0403cc658.nii.gz

MRN/sub-0027039/ses-2/mri/julichbrain_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MRN/sub-0027039/ses-2/mri/julichbrain_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/5g/MD5E-s186471--af1964cec550308bd3a03948c85ded2b.nii.gz/MD5E-s186471--af1964cec550308bd3a03948c85ded2b.nii.gz

MRN/sub-0027039/ses-2/mri/lpba40_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MRN/sub-0027039/ses-2/mri/lpba40_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/m0wp1sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/m0wp2sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/m0wp3sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/xP/MD5E-s2564189--2d3f6e288175303ba8766f2fcbb36f5f.nii.gz/MD5E-s2564189--2d3f6e288175303ba8766f2fcbb36f5f.nii.gz

MRN/sub-0027039/ses-2/mri/mori_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MRN/sub-0027039/ses-2/mri/mori_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/mwp1sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/2m/MD5E-s2579933--c053888f2fe9ae000b9c39684fff5582.nii.gz/MD5E-s2579933--c053888f2fe9ae000b9c39684fff5582.nii.gz

MRN/sub-0027039/ses-2/mri/mwp2sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XQ/j0/MD5E-s2338836--b2710c5cfef919b116fe9f0ad20e2b72.nii.gz/MD5E-s2338836--b2710c5cfef919b116fe9f0ad20e2b72.nii.gz

MRN/sub-0027039/ses-2/mri/mwp3sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/neuromorphometrics_sub-0027039_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/neuromorphometrics_sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/p0sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/p1sub-0027039_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027039/ses-2/mri/p2sub-0027039_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027039/ses-2/mri/p3sub-0027039_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027039/ses-2/mri/rp1sub-0027039_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027039/ses-2/mri/rp2sub-0027039_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027039/ses-2/mri/rp3sub-0027039_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027039/ses-2/mri/t_sub-0027039_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027039/ses-2/mri/t_sub-0027039_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027039/ses-2/mri/thalamus_sub-0027039_ses-2_run-1_T1w.csv

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MRN/sub-0027039/ses-2/mri/thalamus_sub-0027039_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027039/ses-2/mri/wj_sub-0027039_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027039/ses-2/mri/wmisub-0027039_ses-2_run-1_T1w.nii.gz

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