[DATALAD RUNCMD] Compute NYU_2/sub-0025175/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025175/ses-1/anat/sub-0025175_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025175/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025175/ses-1/label/catROI_sub-0025175_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6f/gx/MD5E-s58051--79ebbd405778f319b0ed27d0b6eb51e0.mat/MD5E-s58051--79ebbd405778f319b0ed27d0b6eb51e0.mat

NYU_2/sub-0025175/ses-1/label/catROI_sub-0025175_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0X/xg/MD5E-s189236--3694e2c8bf40494f1f0b5222ba93cd27.xml/MD5E-s189236--3694e2c8bf40494f1f0b5222ba93cd27.xml

NYU_2/sub-0025175/ses-1/label/catROI_sub-0025175_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/0k/MD5E-s57745--7a0cd6eb188d039bf19a3aa00e4ba121.mat/MD5E-s57745--7a0cd6eb188d039bf19a3aa00e4ba121.mat

NYU_2/sub-0025175/ses-1/label/catROI_sub-0025175_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/Kq/MD5E-s189225--9faa415fa4b58011c54df629dc511514.xml/MD5E-s189225--9faa415fa4b58011c54df629dc511514.xml

NYU_2/sub-0025175/ses-1/label/catROIs_sub-0025175_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m8/GG/MD5E-s120493--6eeab368553145060ada1ac33ec1301d.mat/MD5E-s120493--6eeab368553145060ada1ac33ec1301d.mat

NYU_2/sub-0025175/ses-1/label/catROIs_sub-0025175_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qq/3J/MD5E-s332165--016f98a7cee8ed8c85270524c62ef9b8.xml/MD5E-s332165--016f98a7cee8ed8c85270524c62ef9b8.xml

NYU_2/sub-0025175/ses-1/label/catROIs_sub-0025175_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/M5/MD5E-s120472--04b5aae59d1d4596377c7c3fa21ffaec.mat/MD5E-s120472--04b5aae59d1d4596377c7c3fa21ffaec.mat

NYU_2/sub-0025175/ses-1/label/catROIs_sub-0025175_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/vx/MD5E-s332192--92e07394fce168234378b4c697916c7e.xml/MD5E-s332192--92e07394fce168234378b4c697916c7e.xml

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3m/w1/MD5E-s131510--bd3a8bf9498857b652db7974c747fa4b.nii.gz/MD5E-s131510--bd3a8bf9498857b652db7974c747fa4b.nii.gz

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/3f/MD5E-s132355--975ef99618355547abce2f2f95677f8a.nii.gz/MD5E-s132355--975ef99618355547abce2f2f95677f8a.nii.gz

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p2/40/MD5E-s149104--a4a3ebd1579008fe85cb6ea8f659afe9.nii.gz/MD5E-s149104--a4a3ebd1579008fe85cb6ea8f659afe9.nii.gz

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/XM/MD5E-s149665--d33cc102fba01a6ad442d9d573e21ec7.nii.gz/MD5E-s149665--d33cc102fba01a6ad442d9d573e21ec7.nii.gz

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gz/4f/MD5E-s198528--5a8cad751bf38e8e68c24d27a5da07d9.nii.gz/MD5E-s198528--5a8cad751bf38e8e68c24d27a5da07d9.nii.gz

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/Zg/MD5E-s199039--361d4078edf87cbc1f44ba7df6e0ea09.nii.gz/MD5E-s199039--361d4078edf87cbc1f44ba7df6e0ea09.nii.gz

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KW/86/MD5E-s221467--afb67a57cdc6a8af8cb7dbc4c4f21204.nii.gz/MD5E-s221467--afb67a57cdc6a8af8cb7dbc4c4f21204.nii.gz

NYU_2/sub-0025175/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/wz/MD5E-s222094--77db08cbae42052d93582bc5cd3e4175.nii.gz/MD5E-s222094--77db08cbae42052d93582bc5cd3e4175.nii.gz

NYU_2/sub-0025175/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9Z/76/MD5E-s18525--8397ba9880b477f02531ef124ca26b92.nii.gz/MD5E-s18525--8397ba9880b477f02531ef124ca26b92.nii.gz

NYU_2/sub-0025175/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/54/MD5E-s18763--e942d64c164f052e4364b41103e3fcea.nii.gz/MD5E-s18763--e942d64c164f052e4364b41103e3fcea.nii.gz

NYU_2/sub-0025175/ses-1/mri/aal3_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z0/zv/MD5E-s151660--d1ef9f13032f2705d12f3f5302321e81.nii.gz/MD5E-s151660--d1ef9f13032f2705d12f3f5302321e81.nii.gz

NYU_2/sub-0025175/ses-1/mri/aal3_sub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/5M/MD5E-s152509--427b8d65c48cc1aaa74de700f8345c6d.nii.gz/MD5E-s152509--427b8d65c48cc1aaa74de700f8345c6d.nii.gz

NYU_2/sub-0025175/ses-1/mri/anatomy3_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/anatomy3_sub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/WW/MD5E-s106776--942bb2a35f968b3f0f5d80575b5d8862.nii.gz/MD5E-s106776--942bb2a35f968b3f0f5d80575b5d8862.nii.gz

NYU_2/sub-0025175/ses-1/mri/anon_misub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/anon_misub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/K3/MD5E-s3010579--5b8d67df0d8e184bdd946bba193a7bc8.nii.gz/MD5E-s3010579--5b8d67df0d8e184bdd946bba193a7bc8.nii.gz

NYU_2/sub-0025175/ses-1/mri/anon_msub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/anon_msub-0025175_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025175/ses-1/mri/cat_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QZ/j3/MD5E-s79185--748f33bea8ff5fac18cb90d4f712ffee.nii.gz/MD5E-s79185--748f33bea8ff5fac18cb90d4f712ffee.nii.gz

NYU_2/sub-0025175/ses-1/mri/cat_sub-0025175_ses-1_run-2_T1w.nii.gz

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+../../../../.git/annex/objects/9M/G7/MD5E-s81112--2d7838db6bca22dca487b135635b35f0.nii.gz/MD5E-s81112--2d7838db6bca22dca487b135635b35f0.nii.gz

NYU_2/sub-0025175/ses-1/mri/cobra_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/cobra_sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/hammers_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/hammers_sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/ibsr_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/ibsr_sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/it_sub-0025175_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/V8/Jq/MD5E-s282--ffd4a5dc5cd8cffc2b616ace4986e80f.mat/MD5E-s282--ffd4a5dc5cd8cffc2b616ace4986e80f.mat

NYU_2/sub-0025175/ses-1/mri/it_sub-0025175_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/it_sub-0025175_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025175/ses-1/mri/it_sub-0025175_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025175/ses-1/mri/iy_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/iy_sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/julichbrain_sub-0025175_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025175/ses-1/mri/julichbrain_sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/lpba40_sub-0025175_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/lpba40_sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/m0wp1sub-0025175_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/m0wp1sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/m0wp2sub-0025175_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/m0wp2sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/m0wp3sub-0025175_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/m0wp3sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/mori_sub-0025175_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/mori_sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/mwp1sub-0025175_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/mwp1sub-0025175_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025175/ses-1/mri/mwp2sub-0025175_ses-1_run-1_T1w.nii.gz

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