[DATALAD RUNCMD] Compute SWU_4/sub-0025808/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025808/ses-2/anat/sub-0025808_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025808/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025808/ses-2/label/catROI_sub-0025808_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/Xp/MD5E-s61328--cbc78da9e29c6bda8107926394d65224.mat/MD5E-s61328--cbc78da9e29c6bda8107926394d65224.mat

SWU_4/sub-0025808/ses-2/label/catROI_sub-0025808_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/M2/MD5E-s188597--cb0eee4d5fb64d8ded3345986910e641.xml/MD5E-s188597--cb0eee4d5fb64d8ded3345986910e641.xml

SWU_4/sub-0025808/ses-2/label/catROIs_sub-0025808_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/19/MD5E-s120003--1b722376672d1fbd854c7adc0ae6af7d.mat/MD5E-s120003--1b722376672d1fbd854c7adc0ae6af7d.mat

SWU_4/sub-0025808/ses-2/label/catROIs_sub-0025808_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/wQ/MD5E-s332153--630d307be25bdb761da50e62412c99c4.xml/MD5E-s332153--630d307be25bdb761da50e62412c99c4.xml

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/06/MD5E-s184269--4b44504e27c4720b603641d4012ac56e.nii.gz/MD5E-s184269--4b44504e27c4720b603641d4012ac56e.nii.gz

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/jp/MD5E-s206452--9061e9f11c85a811ec510438863ab741.nii.gz/MD5E-s206452--9061e9f11c85a811ec510438863ab741.nii.gz

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/8X/MD5E-s276476--4377ab439639af979452089c8872b902.nii.gz/MD5E-s276476--4377ab439639af979452089c8872b902.nii.gz

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025808/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/89/vz/MD5E-s307561--b9dfd353ce224c2a66196ac7787203a1.nii.gz/MD5E-s307561--b9dfd353ce224c2a66196ac7787203a1.nii.gz

SWU_4/sub-0025808/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025808/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/q6/MD5E-s26417--d7f22c01f50b40b3cbab46fc23d5b3b6.nii.gz/MD5E-s26417--d7f22c01f50b40b3cbab46fc23d5b3b6.nii.gz

SWU_4/sub-0025808/ses-2/mri/aal3_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025808/ses-2/mri/aal3_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/V7/MD5E-s206907--24b6ed6b9f19886eb55bb32f0edef6f6.nii.gz/MD5E-s206907--24b6ed6b9f19886eb55bb32f0edef6f6.nii.gz

SWU_4/sub-0025808/ses-2/mri/anatomy3_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025808/ses-2/mri/anatomy3_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/2Z/MD5E-s151746--36da844c18bab68a8a20e329b1fc3d91.nii.gz/MD5E-s151746--36da844c18bab68a8a20e329b1fc3d91.nii.gz

SWU_4/sub-0025808/ses-2/mri/anon_misub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/78/MD5E-s10138629--34e610633d6aadf6c6e79ae740b87ab6.nii.gz/MD5E-s10138629--34e610633d6aadf6c6e79ae740b87ab6.nii.gz

SWU_4/sub-0025808/ses-2/mri/anon_msub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gp/jZ/MD5E-s11580684--729110be014f32e9b2b4ba2f218e1611.nii.gz/MD5E-s11580684--729110be014f32e9b2b4ba2f218e1611.nii.gz

SWU_4/sub-0025808/ses-2/mri/cat_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/6q/MD5E-s107395--076c66dc161033dc0e966e0a677ee003.nii.gz/MD5E-s107395--076c66dc161033dc0e966e0a677ee003.nii.gz

SWU_4/sub-0025808/ses-2/mri/cobra_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025808/ses-2/mri/cobra_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/M8/MD5E-s52882--00a802d7974d85c3ccae91347fe96ab7.nii.gz/MD5E-s52882--00a802d7974d85c3ccae91347fe96ab7.nii.gz

SWU_4/sub-0025808/ses-2/mri/hammers_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025808/ses-2/mri/hammers_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/x0/MD5E-s163259--2c528e2d205c4398a3de41cf9d48e6a3.nii.gz/MD5E-s163259--2c528e2d205c4398a3de41cf9d48e6a3.nii.gz

SWU_4/sub-0025808/ses-2/mri/ibsr_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025808/ses-2/mri/ibsr_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/mZ/MD5E-s172104--18e953f2be706c23d76caf43eab8c8e5.nii.gz/MD5E-s172104--18e953f2be706c23d76caf43eab8c8e5.nii.gz

SWU_4/sub-0025808/ses-2/mri/it_sub-0025808_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/v3/MD5E-s284--8cf0dd494eb3ca0da3a2d2c0733e9da3.mat/MD5E-s284--8cf0dd494eb3ca0da3a2d2c0733e9da3.mat

SWU_4/sub-0025808/ses-2/mri/it_sub-0025808_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/zZ/MD5E-s283--f05eb17b5bba4b6f1e7d3fb6ffc5d570.mat/MD5E-s283--f05eb17b5bba4b6f1e7d3fb6ffc5d570.mat

SWU_4/sub-0025808/ses-2/mri/iy_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/gM/MD5E-s52016197--265a38779eebe40608a4fe4ab55a7e2f.nii.gz/MD5E-s52016197--265a38779eebe40608a4fe4ab55a7e2f.nii.gz

SWU_4/sub-0025808/ses-2/mri/julichbrain_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025808/ses-2/mri/julichbrain_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K2/v0/MD5E-s223530--90fe919c048af2b2b52bfb2c23330dc6.nii.gz/MD5E-s223530--90fe919c048af2b2b52bfb2c23330dc6.nii.gz

SWU_4/sub-0025808/ses-2/mri/lpba40_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025808/ses-2/mri/lpba40_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/3J/MD5E-s159555--1ce955399db859bdca89ce01f032627e.nii.gz/MD5E-s159555--1ce955399db859bdca89ce01f032627e.nii.gz

SWU_4/sub-0025808/ses-2/mri/m0wp1sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/K4/MD5E-s2577249--78ad73402f14d051c1fdabf0baba7e05.nii.gz/MD5E-s2577249--78ad73402f14d051c1fdabf0baba7e05.nii.gz

SWU_4/sub-0025808/ses-2/mri/m0wp2sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/Qx/MD5E-s2294021--6ac53cde32e64d56e74c1bcb24f81a2c.nii.gz/MD5E-s2294021--6ac53cde32e64d56e74c1bcb24f81a2c.nii.gz

SWU_4/sub-0025808/ses-2/mri/m0wp3sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/mX/MD5E-s2449203--e0ace255b22249fdcfe1927179acd676.nii.gz/MD5E-s2449203--e0ace255b22249fdcfe1927179acd676.nii.gz

SWU_4/sub-0025808/ses-2/mri/mori_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025808/ses-2/mri/mori_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/9F/MD5E-s189317--a78b8dafcabb5b80401ae298d242e657.nii.gz/MD5E-s189317--a78b8dafcabb5b80401ae298d242e657.nii.gz

SWU_4/sub-0025808/ses-2/mri/mwp1sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/78/MD5E-s2578259--eb82d2d442af9a25b6be764643566e19.nii.gz/MD5E-s2578259--eb82d2d442af9a25b6be764643566e19.nii.gz

SWU_4/sub-0025808/ses-2/mri/mwp2sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/65/MD5E-s2295817--c010edc208f0ddd357af2e78e36af009.nii.gz/MD5E-s2295817--c010edc208f0ddd357af2e78e36af009.nii.gz

SWU_4/sub-0025808/ses-2/mri/mwp3sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/qK/MD5E-s2448972--9446b6d2cfe337c9ae8bccb75c7edfa7.nii.gz/MD5E-s2448972--9446b6d2cfe337c9ae8bccb75c7edfa7.nii.gz

SWU_4/sub-0025808/ses-2/mri/neuromorphometrics_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025808/ses-2/mri/neuromorphometrics_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/v4/MD5E-s222800--3c50fc3d64d4f5f64c3b24b9a414d147.nii.gz/MD5E-s222800--3c50fc3d64d4f5f64c3b24b9a414d147.nii.gz

SWU_4/sub-0025808/ses-2/mri/p0sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/x7/MD5E-s692834--49bf17adb3540e3b2126ca3b996dad16.nii.gz/MD5E-s692834--49bf17adb3540e3b2126ca3b996dad16.nii.gz

SWU_4/sub-0025808/ses-2/mri/p1sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/PX/MD5E-s741647--c2e1f539850a08bbe9ce6602ffe4bee4.nii.gz/MD5E-s741647--c2e1f539850a08bbe9ce6602ffe4bee4.nii.gz

SWU_4/sub-0025808/ses-2/mri/p2sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/J8/MD5E-s501517--b0d39cf8798d5fe3a752c2401c908762.nii.gz/MD5E-s501517--b0d39cf8798d5fe3a752c2401c908762.nii.gz

SWU_4/sub-0025808/ses-2/mri/p3sub-0025808_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025808/ses-2/mri/rp1sub-0025808_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/5v/MD5E-s447183--9e73b28f5868ee130486fbca3bace3ac.nii.gz/MD5E-s447183--9e73b28f5868ee130486fbca3bace3ac.nii.gz

SWU_4/sub-0025808/ses-2/mri/rp2sub-0025808_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025808/ses-2/mri/rp3sub-0025808_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025808/ses-2/mri/t_sub-0025808_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025808/ses-2/mri/t_sub-0025808_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/1J/MD5E-s284--a6263f669ab2d38b0d271886baeda1b2.mat/MD5E-s284--a6263f669ab2d38b0d271886baeda1b2.mat

SWU_4/sub-0025808/ses-2/mri/thalamus_sub-0025808_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025808/ses-2/mri/thalamus_sub-0025808_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025808/ses-2/mri/wj_sub-0025808_ses-2_run-1_T1w.nii.gz

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