[DATALAD RUNCMD] Compute NYU_2/sub-0025115/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025115/ses-1/anat/sub-0025115_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025115/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025115/ses-1/label/catROI_sub-0025115_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2G/KJ/MD5E-s58032--def23993ad9f93510b7c04047edc92c5.mat/MD5E-s58032--def23993ad9f93510b7c04047edc92c5.mat

NYU_2/sub-0025115/ses-1/label/catROI_sub-0025115_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kZ/1X/MD5E-s188884--9e50874270ba3fc0010a1f0926c482e6.xml/MD5E-s188884--9e50874270ba3fc0010a1f0926c482e6.xml

NYU_2/sub-0025115/ses-1/label/catROI_sub-0025115_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/m6/MD5E-s57766--4f3065b6e8c5b1cd5be6e99431b8d2f0.mat/MD5E-s57766--4f3065b6e8c5b1cd5be6e99431b8d2f0.mat

NYU_2/sub-0025115/ses-1/label/catROI_sub-0025115_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/Q2/MD5E-s188975--993a1e5d3cf6f34369cfa4892eb2ec09.xml/MD5E-s188975--993a1e5d3cf6f34369cfa4892eb2ec09.xml

NYU_2/sub-0025115/ses-1/label/catROIs_sub-0025115_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qm/Wm/MD5E-s120300--96c1858a1aba3f1b57f51db4dfab9bb0.mat/MD5E-s120300--96c1858a1aba3f1b57f51db4dfab9bb0.mat

NYU_2/sub-0025115/ses-1/label/catROIs_sub-0025115_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P6/qv/MD5E-s332118--7642f991680fc6429698c67921fce053.xml/MD5E-s332118--7642f991680fc6429698c67921fce053.xml

NYU_2/sub-0025115/ses-1/label/catROIs_sub-0025115_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/24/MD5E-s120287--dfec9a1178d0985a6ecbe59479c8e753.mat/MD5E-s120287--dfec9a1178d0985a6ecbe59479c8e753.mat

NYU_2/sub-0025115/ses-1/label/catROIs_sub-0025115_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/7g/MD5E-s332152--c43b4a8e992e7a445057771611e3351b.xml/MD5E-s332152--c43b4a8e992e7a445057771611e3351b.xml

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5Z/Xx/MD5E-s146192--8de7cf3b45a1a80cfee49d4f811e8a6e.nii.gz/MD5E-s146192--8de7cf3b45a1a80cfee49d4f811e8a6e.nii.gz

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K6/X3/MD5E-s145014--6ae8dbc36308b556d3b1e8a557c2a9ad.nii.gz/MD5E-s145014--6ae8dbc36308b556d3b1e8a557c2a9ad.nii.gz

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pV/wX/MD5E-s162430--e87be2eacf26e654bfedb8eb1df3bcad.nii.gz/MD5E-s162430--e87be2eacf26e654bfedb8eb1df3bcad.nii.gz

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/0V/MD5E-s161204--8e7969aafe67216201d43a9227c1cad8.nii.gz/MD5E-s161204--8e7969aafe67216201d43a9227c1cad8.nii.gz

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z5/mK/MD5E-s219766--54d02d0d96f70e4d89a60fb2a097bf0a.nii.gz/MD5E-s219766--54d02d0d96f70e4d89a60fb2a097bf0a.nii.gz

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/2K/MD5E-s217659--be08878873e235f205f3966ad45311c1.nii.gz/MD5E-s217659--be08878873e235f205f3966ad45311c1.nii.gz

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GX/6z/MD5E-s242459--8a07db5f6aed8c8c88c3bd509b5f8b4c.nii.gz/MD5E-s242459--8a07db5f6aed8c8c88c3bd509b5f8b4c.nii.gz

NYU_2/sub-0025115/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/8K/MD5E-s240895--494066a85bbfa6d2d5289440d9a1175f.nii.gz/MD5E-s240895--494066a85bbfa6d2d5289440d9a1175f.nii.gz

NYU_2/sub-0025115/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5W/7V/MD5E-s19146--a7a3d260cdde222bb920ab99b0d1647b.nii.gz/MD5E-s19146--a7a3d260cdde222bb920ab99b0d1647b.nii.gz

NYU_2/sub-0025115/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/Xj/MD5E-s19158--42a7601ca429ba1f15ecc984885b4cee.nii.gz/MD5E-s19158--42a7601ca429ba1f15ecc984885b4cee.nii.gz

NYU_2/sub-0025115/ses-1/mri/aal3_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f7/vp/MD5E-s163989--dff4ea34c66c72241bf9cbcb91d3e219.nii.gz/MD5E-s163989--dff4ea34c66c72241bf9cbcb91d3e219.nii.gz

NYU_2/sub-0025115/ses-1/mri/aal3_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/Qz/MD5E-s163280--da84a7517bb6ca6f03a918af457e04c6.nii.gz/MD5E-s163280--da84a7517bb6ca6f03a918af457e04c6.nii.gz

NYU_2/sub-0025115/ses-1/mri/anatomy3_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jp/pv/MD5E-s115680--3f417df4d1bda62528407902661c3410.nii.gz/MD5E-s115680--3f417df4d1bda62528407902661c3410.nii.gz

NYU_2/sub-0025115/ses-1/mri/anatomy3_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/MG/MD5E-s114949--6e79ac23698fcddd721d67ae5888f4ab.nii.gz/MD5E-s114949--6e79ac23698fcddd721d67ae5888f4ab.nii.gz

NYU_2/sub-0025115/ses-1/mri/anon_misub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025115/ses-1/mri/anon_misub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025115/ses-1/mri/anon_msub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025115/ses-1/mri/anon_msub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/cat_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/12/vK/MD5E-s87616--2d3d14ba7339b092aa1d6006da4f08e6.nii.gz/MD5E-s87616--2d3d14ba7339b092aa1d6006da4f08e6.nii.gz

NYU_2/sub-0025115/ses-1/mri/cat_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/2q/MD5E-s84848--31d11b5b15a6b4523414511a560971c2.nii.gz/MD5E-s84848--31d11b5b15a6b4523414511a560971c2.nii.gz

NYU_2/sub-0025115/ses-1/mri/cobra_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jW/qk/MD5E-s38817--341da449c14783db51a8a34492a14244.nii.gz/MD5E-s38817--341da449c14783db51a8a34492a14244.nii.gz

NYU_2/sub-0025115/ses-1/mri/cobra_sub-0025115_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025115/ses-1/mri/hammers_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GX/QM/MD5E-s125049--79f5241b376e5a52a3e9f12f338107da.nii.gz/MD5E-s125049--79f5241b376e5a52a3e9f12f338107da.nii.gz

NYU_2/sub-0025115/ses-1/mri/hammers_sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/ibsr_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025115/ses-1/mri/ibsr_sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/it_sub-0025115_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wg/8G/MD5E-s282--81bc6f6906ff1c57bdc58f04a5bf2d07.mat/MD5E-s282--81bc6f6906ff1c57bdc58f04a5bf2d07.mat

NYU_2/sub-0025115/ses-1/mri/it_sub-0025115_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025115/ses-1/mri/it_sub-0025115_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025115/ses-1/mri/it_sub-0025115_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025115/ses-1/mri/iy_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025115/ses-1/mri/iy_sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/julichbrain_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025115/ses-1/mri/julichbrain_sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/lpba40_sub-0025115_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025115/ses-1/mri/lpba40_sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/m0wp1sub-0025115_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/m0wp1sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/m0wp2sub-0025115_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/m0wp2sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/m0wp3sub-0025115_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/m0wp3sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/mori_sub-0025115_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/mori_sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/mwp1sub-0025115_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/mwp1sub-0025115_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025115/ses-1/mri/mwp2sub-0025115_ses-1_run-1_T1w.nii.gz

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