[DATALAD RUNCMD] Compute BNU_1/sub-0025893/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025893/ses-2/anat/sub-0025893_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025893/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025893/ses-2/label/catROI_sub-0025893_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9f/w0/MD5E-s61276--62d12300a4238accdffc5652e3cedb81.mat/MD5E-s61276--62d12300a4238accdffc5652e3cedb81.mat

BNU_1/sub-0025893/ses-2/label/catROI_sub-0025893_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/vM/MD5E-s188594--9b80885f4e3eedf6a49de2efb809b384.xml/MD5E-s188594--9b80885f4e3eedf6a49de2efb809b384.xml

BNU_1/sub-0025893/ses-2/label/catROIs_sub-0025893_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/G1/MD5E-s120015--792d9a8452628ac88908feecd0d7e161.mat/MD5E-s120015--792d9a8452628ac88908feecd0d7e161.mat

BNU_1/sub-0025893/ses-2/label/catROIs_sub-0025893_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/7v/MD5E-s332103--c81a9da82711869d8216c9623979e8fd.xml/MD5E-s332103--c81a9da82711869d8216c9623979e8fd.xml

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/wX/MD5E-s160682--7d98e83baa577758dc70e0db248a0504.nii.gz/MD5E-s160682--7d98e83baa577758dc70e0db248a0504.nii.gz

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/22/MD5E-s178744--8512274161e4eb3da8f7f7453ad24094.nii.gz/MD5E-s178744--8512274161e4eb3da8f7f7453ad24094.nii.gz

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/64/MD5E-s241937--3b2e4e9b9e4b46b0bb4e5a3a6ecdd643.nii.gz/MD5E-s241937--3b2e4e9b9e4b46b0bb4e5a3a6ecdd643.nii.gz

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025893/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/24/MD5E-s269794--6d69e076d5bcd8d93f84c61c6fcaf5c4.nii.gz/MD5E-s269794--6d69e076d5bcd8d93f84c61c6fcaf5c4.nii.gz

BNU_1/sub-0025893/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025893/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/Z5/MD5E-s21102--f6716cf77eb1b0281916127e5d95e58a.nii.gz/MD5E-s21102--f6716cf77eb1b0281916127e5d95e58a.nii.gz

BNU_1/sub-0025893/ses-2/mri/aal3_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025893/ses-2/mri/aal3_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/VJ/MD5E-s181145--710f2df0f4848d0b216611f532b29185.nii.gz/MD5E-s181145--710f2df0f4848d0b216611f532b29185.nii.gz

BNU_1/sub-0025893/ses-2/mri/anatomy3_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025893/ses-2/mri/anatomy3_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/6Q/MD5E-s127148--d4736f43ee1d7153e3e6e78c7955b95b.nii.gz/MD5E-s127148--d4736f43ee1d7153e3e6e78c7955b95b.nii.gz

BNU_1/sub-0025893/ses-2/mri/anon_misub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/8P/MD5E-s4334059--8f376e07bef43e59def04e4c19119ffa.nii.gz/MD5E-s4334059--8f376e07bef43e59def04e4c19119ffa.nii.gz

BNU_1/sub-0025893/ses-2/mri/anon_msub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/9x/MD5E-s7690720--f066941eb45d72716e63b6917ed2a4bb.nii.gz/MD5E-s7690720--f066941eb45d72716e63b6917ed2a4bb.nii.gz

BNU_1/sub-0025893/ses-2/mri/cat_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/zq/MD5E-s96061--edab36518ae17cbb90f3bfa29a5a05b2.nii.gz/MD5E-s96061--edab36518ae17cbb90f3bfa29a5a05b2.nii.gz

BNU_1/sub-0025893/ses-2/mri/cobra_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025893/ses-2/mri/cobra_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/m7/MD5E-s43207--6775c4f1bc68538fc3b3545003f764b5.nii.gz/MD5E-s43207--6775c4f1bc68538fc3b3545003f764b5.nii.gz

BNU_1/sub-0025893/ses-2/mri/hammers_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025893/ses-2/mri/hammers_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/GJ/MD5E-s142893--8bfc9422329e185ce22483f5179b91cd.nii.gz/MD5E-s142893--8bfc9422329e185ce22483f5179b91cd.nii.gz

BNU_1/sub-0025893/ses-2/mri/ibsr_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025893/ses-2/mri/ibsr_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7X/jF/MD5E-s151547--ad32cca38d933d737e313b8c95951af5.nii.gz/MD5E-s151547--ad32cca38d933d737e313b8c95951af5.nii.gz

BNU_1/sub-0025893/ses-2/mri/it_sub-0025893_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/jW/MD5E-s284--61ed85650b3dd63b7c956af120faf1de.mat/MD5E-s284--61ed85650b3dd63b7c956af120faf1de.mat

BNU_1/sub-0025893/ses-2/mri/it_sub-0025893_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VJ/6w/MD5E-s284--ca4872cfcdec6f11b1638a97bf4b1c4a.mat/MD5E-s284--ca4872cfcdec6f11b1638a97bf4b1c4a.mat

BNU_1/sub-0025893/ses-2/mri/iy_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/X7/MD5E-s39217405--fd4bba2b8dce17e7c7c8b4b209e93681.nii.gz/MD5E-s39217405--fd4bba2b8dce17e7c7c8b4b209e93681.nii.gz

BNU_1/sub-0025893/ses-2/mri/julichbrain_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025893/ses-2/mri/julichbrain_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/30/MD5E-s191954--f6ea88ddc1de0eccba85668625ce74a1.nii.gz/MD5E-s191954--f6ea88ddc1de0eccba85668625ce74a1.nii.gz

BNU_1/sub-0025893/ses-2/mri/lpba40_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025893/ses-2/mri/lpba40_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/j0/MD5E-s141191--4c2445619745572d4105fdaf798dc840.nii.gz/MD5E-s141191--4c2445619745572d4105fdaf798dc840.nii.gz

BNU_1/sub-0025893/ses-2/mri/m0wp1sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/G3/MD5E-s2567373--df2496289afb301b989ac3505dd05807.nii.gz/MD5E-s2567373--df2496289afb301b989ac3505dd05807.nii.gz

BNU_1/sub-0025893/ses-2/mri/m0wp2sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/20/MD5E-s2280174--9884a2c4cccb12223d81a37e6944e547.nii.gz/MD5E-s2280174--9884a2c4cccb12223d81a37e6944e547.nii.gz

BNU_1/sub-0025893/ses-2/mri/m0wp3sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/ZV/MD5E-s2385575--085c94f861b7902f61f0d106c58d34cd.nii.gz/MD5E-s2385575--085c94f861b7902f61f0d106c58d34cd.nii.gz

BNU_1/sub-0025893/ses-2/mri/mori_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025893/ses-2/mri/mori_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/F6/MD5E-s166222--0ac0abaa9b89d09b1e95663db925d671.nii.gz/MD5E-s166222--0ac0abaa9b89d09b1e95663db925d671.nii.gz

BNU_1/sub-0025893/ses-2/mri/mwp1sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/73/MD5E-s2566880--733a454a4d62b9f898640a60b41bce98.nii.gz/MD5E-s2566880--733a454a4d62b9f898640a60b41bce98.nii.gz

BNU_1/sub-0025893/ses-2/mri/mwp2sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/FZ/MD5E-s2277376--7d0b01b4c3a8261417c814243db620ca.nii.gz/MD5E-s2277376--7d0b01b4c3a8261417c814243db620ca.nii.gz

BNU_1/sub-0025893/ses-2/mri/mwp3sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/3Z/MD5E-s2383236--b08c52087f0360d65164c9ddda41e67e.nii.gz/MD5E-s2383236--b08c52087f0360d65164c9ddda41e67e.nii.gz

BNU_1/sub-0025893/ses-2/mri/neuromorphometrics_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025893/ses-2/mri/neuromorphometrics_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/pp/MD5E-s194370--7e0bdaf49d1d8a925e8adf18a28f71c5.nii.gz/MD5E-s194370--7e0bdaf49d1d8a925e8adf18a28f71c5.nii.gz

BNU_1/sub-0025893/ses-2/mri/p0sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/gw/MD5E-s816631--fa6ad56bc7a2e4a68f54a65e8cde1b27.nii.gz/MD5E-s816631--fa6ad56bc7a2e4a68f54a65e8cde1b27.nii.gz

BNU_1/sub-0025893/ses-2/mri/p1sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xq/0J/MD5E-s841919--d5610f02c4eddbb53de67f0aea6d3025.nii.gz/MD5E-s841919--d5610f02c4eddbb53de67f0aea6d3025.nii.gz

BNU_1/sub-0025893/ses-2/mri/p2sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/VQ/MD5E-s582124--4e7c9421121290a0c693b80cb181663f.nii.gz/MD5E-s582124--4e7c9421121290a0c693b80cb181663f.nii.gz

BNU_1/sub-0025893/ses-2/mri/p3sub-0025893_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Km/1p/MD5E-s486027--61947470b5a744c71652ec9d39e8aafa.nii.gz/MD5E-s486027--61947470b5a744c71652ec9d39e8aafa.nii.gz

BNU_1/sub-0025893/ses-2/mri/rp1sub-0025893_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/7j/MD5E-s432182--af43111900ef6234e9eb542249b56690.nii.gz/MD5E-s432182--af43111900ef6234e9eb542249b56690.nii.gz

BNU_1/sub-0025893/ses-2/mri/rp2sub-0025893_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025893/ses-2/mri/rp3sub-0025893_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025893/ses-2/mri/t_sub-0025893_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025893/ses-2/mri/t_sub-0025893_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/V8/MD5E-s283--1e7a9f5d73fed01fad201668486df962.mat/MD5E-s283--1e7a9f5d73fed01fad201668486df962.mat

BNU_1/sub-0025893/ses-2/mri/thalamus_sub-0025893_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025893/ses-2/mri/thalamus_sub-0025893_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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