[DATALAD RUNCMD] Compute IPCAS_7/sub-0026115/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026115/ses-1/anat/sub-0026115_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026115/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026115/ses-1/label/catROI_sub-0026115_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mm/P5/MD5E-s61422--e7dad458a509de8704dbc0973a3785ba.mat/MD5E-s61422--e7dad458a509de8704dbc0973a3785ba.mat

IPCAS_7/sub-0026115/ses-1/label/catROI_sub-0026115_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/W9/MD5E-s188760--132c42d5111bd129e63e03857acc9d21.xml/MD5E-s188760--132c42d5111bd129e63e03857acc9d21.xml

IPCAS_7/sub-0026115/ses-1/label/catROIs_sub-0026115_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/gK/MD5E-s120032--7cc7bb56d2785e04612da0ab5ee192be.mat/MD5E-s120032--7cc7bb56d2785e04612da0ab5ee192be.mat

IPCAS_7/sub-0026115/ses-1/label/catROIs_sub-0026115_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/8p/MD5E-s332099--68170b948ccb77125237a19e34bea9c9.xml/MD5E-s332099--68170b948ccb77125237a19e34bea9c9.xml

IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/kj/MD5E-s185068--7680f2f7b4aebc6a106941c238bf9ccd.nii.gz/MD5E-s185068--7680f2f7b4aebc6a106941c238bf9ccd.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/74/MD5E-s279707--5ea51e3cffd70034373f8affa53e24eb.nii.gz/MD5E-s279707--5ea51e3cffd70034373f8affa53e24eb.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026115/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xM/Fv/MD5E-s311983--c4c24b6e990176f238318a9c37d34c23.nii.gz/MD5E-s311983--c4c24b6e990176f238318a9c37d34c23.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026115/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/m5/MD5E-s26561--63e7b8434c41d88e7e2b7c7695afe652.nii.gz/MD5E-s26561--63e7b8434c41d88e7e2b7c7695afe652.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/aal3_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026115/ses-1/mri/aal3_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/Kf/MD5E-s210126--313b95794842d9c263e1e1742214c26d.nii.gz/MD5E-s210126--313b95794842d9c263e1e1742214c26d.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/anatomy3_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026115/ses-1/mri/anatomy3_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/q4/MD5E-s152095--659c900edcf4bb01864f16b3205f463f.nii.gz/MD5E-s152095--659c900edcf4bb01864f16b3205f463f.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/anon_misub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/f6/MD5E-s5315384--236733d10cc5548ab4f25ec37f953043.nii.gz/MD5E-s5315384--236733d10cc5548ab4f25ec37f953043.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/anon_msub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/kQ/MD5E-s11950082--e6c3e72225b2c2f88b205c888a4d0221.nii.gz/MD5E-s11950082--e6c3e72225b2c2f88b205c888a4d0221.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/cat_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026115/ses-1/mri/cobra_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026115/ses-1/mri/cobra_sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/hammers_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026115/ses-1/mri/hammers_sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/ibsr_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026115/ses-1/mri/ibsr_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026115/ses-1/mri/it_sub-0026115_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/KZ/MD5E-s282--eadd30001258b692f047127491b5cadb.mat/MD5E-s282--eadd30001258b692f047127491b5cadb.mat

IPCAS_7/sub-0026115/ses-1/mri/it_sub-0026115_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/P9/MD5E-s282--c0f7389529d087d366217556fde1dcbf.mat/MD5E-s282--c0f7389529d087d366217556fde1dcbf.mat

IPCAS_7/sub-0026115/ses-1/mri/iy_sub-0026115_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/zg/MD5E-s51779437--87191cc5cc8833ba46437979a3e5f7b1.nii.gz/MD5E-s51779437--87191cc5cc8833ba46437979a3e5f7b1.nii.gz

IPCAS_7/sub-0026115/ses-1/mri/julichbrain_sub-0026115_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026115/ses-1/mri/julichbrain_sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/lpba40_sub-0026115_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026115/ses-1/mri/lpba40_sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/m0wp1sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/m0wp2sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/m0wp3sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/mori_sub-0026115_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026115/ses-1/mri/mori_sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/mwp1sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/mwp2sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/mwp3sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/neuromorphometrics_sub-0026115_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026115/ses-1/mri/neuromorphometrics_sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/p0sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/p1sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/p2sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/p3sub-0026115_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/rp1sub-0026115_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/rp2sub-0026115_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/rp3sub-0026115_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026115/ses-1/mri/t_sub-0026115_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026115/ses-1/mri/t_sub-0026115_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026115/ses-1/mri/thalamus_sub-0026115_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026115/ses-1/mri/thalamus_sub-0026115_ses-1_run-1_T1w.nii.gz

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