[DATALAD RUNCMD] Compute NYU_2/sub-0025069/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025069/ses-1/anat/sub-0025069_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025069/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025069/ses-1/label/catROI_sub-0025069_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/MJ/MD5E-s58212--8cb3a9e9514e153c71a0755a023f621f.mat/MD5E-s58212--8cb3a9e9514e153c71a0755a023f621f.mat

NYU_2/sub-0025069/ses-1/label/catROI_sub-0025069_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/g2/MD5E-s188694--4f837faaa03138aa66d76475554b632b.xml/MD5E-s188694--4f837faaa03138aa66d76475554b632b.xml

NYU_2/sub-0025069/ses-1/label/catROIs_sub-0025069_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/g3/MD5E-s120222--23bb0f1a23892c867b4e85a0066668db.mat/MD5E-s120222--23bb0f1a23892c867b4e85a0066668db.mat

NYU_2/sub-0025069/ses-1/label/catROIs_sub-0025069_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/zV/MD5E-s332073--cb01349b0781f8474e3c6430dda566bb.xml/MD5E-s332073--cb01349b0781f8474e3c6430dda566bb.xml

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xw/mX/MD5E-s153507--35a0cd73447f733ea772855ad16fef5b.nii.gz/MD5E-s153507--35a0cd73447f733ea772855ad16fef5b.nii.gz

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/PP/MD5E-s171623--599af9adba81eccb4db705f248fb3820.nii.gz/MD5E-s171623--599af9adba81eccb4db705f248fb3820.nii.gz

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/0V/MD5E-s229473--785892822c68881a631ee005e6d7aacd.nii.gz/MD5E-s229473--785892822c68881a631ee005e6d7aacd.nii.gz

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025069/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/6V/MD5E-s256072--cbf90e0a583089092011b5b10f1804e5.nii.gz/MD5E-s256072--cbf90e0a583089092011b5b10f1804e5.nii.gz

NYU_2/sub-0025069/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025069_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025069/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/V8/MD5E-s20292--9617ba56e6e5668459b8541aae82dca0.nii.gz/MD5E-s20292--9617ba56e6e5668459b8541aae82dca0.nii.gz

NYU_2/sub-0025069/ses-1/mri/aal3_sub-0025069_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025069/ses-1/mri/aal3_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/Gv/MD5E-s173340--92f1242249edf9a366b5454d6e59830c.nii.gz/MD5E-s173340--92f1242249edf9a366b5454d6e59830c.nii.gz

NYU_2/sub-0025069/ses-1/mri/anatomy3_sub-0025069_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025069/ses-1/mri/anatomy3_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/w8/MD5E-s125781--9c79f700c4f20b87ea5518678d11628b.nii.gz/MD5E-s125781--9c79f700c4f20b87ea5518678d11628b.nii.gz

NYU_2/sub-0025069/ses-1/mri/anon_misub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/38/MD5E-s3872270--21ac09ec3baa5a7ee69e5ebaf172ff14.nii.gz/MD5E-s3872270--21ac09ec3baa5a7ee69e5ebaf172ff14.nii.gz

NYU_2/sub-0025069/ses-1/mri/anon_msub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/96/MD5E-s9679802--f29af0ed8b1f78aae7860329e1df0aac.nii.gz/MD5E-s9679802--f29af0ed8b1f78aae7860329e1df0aac.nii.gz

NYU_2/sub-0025069/ses-1/mri/cat_sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/cobra_sub-0025069_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025069/ses-1/mri/cobra_sub-0025069_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/W5/F8/MD5E-s43318--053dc8351db9e6e97aa3777f724500a7.nii.gz/MD5E-s43318--053dc8351db9e6e97aa3777f724500a7.nii.gz

NYU_2/sub-0025069/ses-1/mri/hammers_sub-0025069_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025069/ses-1/mri/hammers_sub-0025069_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025069/ses-1/mri/ibsr_sub-0025069_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025069/ses-1/mri/ibsr_sub-0025069_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/63/Vw/MD5E-s142958--fc74ac58c31d58c959831f8d3460b296.nii.gz/MD5E-s142958--fc74ac58c31d58c959831f8d3460b296.nii.gz

NYU_2/sub-0025069/ses-1/mri/it_sub-0025069_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/Q5/MD5E-s283--04b3ec4bf540b4592cfb98ebd9c730c8.mat/MD5E-s283--04b3ec4bf540b4592cfb98ebd9c730c8.mat

NYU_2/sub-0025069/ses-1/mri/it_sub-0025069_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/J1/MD5E-s282--2dc724dfcde81e23aa605cd8f3f562b6.mat/MD5E-s282--2dc724dfcde81e23aa605cd8f3f562b6.mat

NYU_2/sub-0025069/ses-1/mri/iy_sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/julichbrain_sub-0025069_ses-1_run-1_T1w.csv

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NYU_2/sub-0025069/ses-1/mri/julichbrain_sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/lpba40_sub-0025069_ses-1_run-1_T1w.csv

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NYU_2/sub-0025069/ses-1/mri/lpba40_sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/m0wp1sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/m0wp2sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/m0wp3sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/mori_sub-0025069_ses-1_run-1_T1w.csv

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NYU_2/sub-0025069/ses-1/mri/mori_sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/mwp1sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/mwp2sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/mwp3sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/neuromorphometrics_sub-0025069_ses-1_run-1_T1w.csv

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NYU_2/sub-0025069/ses-1/mri/neuromorphometrics_sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/p0sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/p1sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/p2sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/p3sub-0025069_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025069/ses-1/mri/rp1sub-0025069_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025069/ses-1/mri/rp2sub-0025069_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025069/ses-1/mri/rp3sub-0025069_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025069/ses-1/mri/t_sub-0025069_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025069/ses-1/mri/t_sub-0025069_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025069/ses-1/mri/thalamus_sub-0025069_ses-1_run-1_T1w.csv

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NYU_2/sub-0025069/ses-1/mri/thalamus_sub-0025069_ses-1_run-1_T1w.nii.gz

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