[DATALAD RUNCMD] Compute MRN/sub-0027052/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027052/ses-2/anat/sub-0027052_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027052/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027052/ses-2/label/catROI_sub-0027052_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/M0/MD5E-s61291--fd6a3baf90835495524b8d7b69a90dff.mat/MD5E-s61291--fd6a3baf90835495524b8d7b69a90dff.mat

MRN/sub-0027052/ses-2/label/catROI_sub-0027052_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/gJ/MD5E-s189185--f96685c012d7db69736cedde34f7f402.xml/MD5E-s189185--f96685c012d7db69736cedde34f7f402.xml

MRN/sub-0027052/ses-2/label/catROIs_sub-0027052_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/Zw/MD5E-s120061--326725bb905ad3c3dda04cfea188eadb.mat/MD5E-s120061--326725bb905ad3c3dda04cfea188eadb.mat

MRN/sub-0027052/ses-2/label/catROIs_sub-0027052_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/KP/MD5E-s332167--6491c395aafc2ce6eeb43d557d777850.xml/MD5E-s332167--6491c395aafc2ce6eeb43d557d777850.xml

MRN/sub-0027052/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027052/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/0X/MD5E-s168023--d08aabd5811530904f3a6abb35cc9875.nii.gz/MD5E-s168023--d08aabd5811530904f3a6abb35cc9875.nii.gz

MRN/sub-0027052/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027052/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/jF/MD5E-s187216--567b18e6e46db364f04b96b2a5126c5a.nii.gz/MD5E-s187216--567b18e6e46db364f04b96b2a5126c5a.nii.gz

MRN/sub-0027052/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027052/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027052/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027052/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/aal3_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/aal3_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/anatomy3_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/anatomy3_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/anon_misub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/anon_msub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/cat_sub-0027052_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/cobra_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027052/ses-2/mri/cobra_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/hammers_sub-0027052_ses-2_run-1_T1w.csv

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MRN/sub-0027052/ses-2/mri/hammers_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/ibsr_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/ibsr_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/it_sub-0027052_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8m/KQ/MD5E-s283--5eece109a655e35f36242a0d1f71a8cd.mat/MD5E-s283--5eece109a655e35f36242a0d1f71a8cd.mat

MRN/sub-0027052/ses-2/mri/it_sub-0027052_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/Qf/MD5E-s284--ca3575f132d81d4518ce790f592d758c.mat/MD5E-s284--ca3575f132d81d4518ce790f592d758c.mat

MRN/sub-0027052/ses-2/mri/iy_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/julichbrain_sub-0027052_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027052/ses-2/mri/julichbrain_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/lpba40_sub-0027052_ses-2_run-1_T1w.csv

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MRN/sub-0027052/ses-2/mri/lpba40_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/m0wp1sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/m0wp2sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/m0wp3sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/mori_sub-0027052_ses-2_run-1_T1w.csv

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MRN/sub-0027052/ses-2/mri/mori_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/mwp1sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/mwp2sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/mwp3sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/neuromorphometrics_sub-0027052_ses-2_run-1_T1w.csv

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MRN/sub-0027052/ses-2/mri/neuromorphometrics_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/p0sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/p1sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/p2sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/p3sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/rp1sub-0027052_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027052/ses-2/mri/rp2sub-0027052_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027052/ses-2/mri/rp3sub-0027052_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027052/ses-2/mri/t_sub-0027052_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027052/ses-2/mri/t_sub-0027052_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027052/ses-2/mri/thalamus_sub-0027052_ses-2_run-1_T1w.csv

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MRN/sub-0027052/ses-2/mri/thalamus_sub-0027052_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027052/ses-2/mri/wj_sub-0027052_ses-2_run-1_T1w.nii.gz

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