[DATALAD RUNCMD] Compute MRN/sub-0027044/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027044/ses-2/anat/sub-0027044_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027044/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027044/ses-2/label/catROI_sub-0027044_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/w0/MD5E-s61239--0e5196d5b383d85b575685a0ad4347dd.mat/MD5E-s61239--0e5196d5b383d85b575685a0ad4347dd.mat

MRN/sub-0027044/ses-2/label/catROI_sub-0027044_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pm/88/MD5E-s189023--310d4381780f35651bb634311da8dfa3.xml/MD5E-s189023--310d4381780f35651bb634311da8dfa3.xml

MRN/sub-0027044/ses-2/label/catROIs_sub-0027044_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/4J/MD5E-s120136--b6207bead6a3285c1f99400779e13a58.mat/MD5E-s120136--b6207bead6a3285c1f99400779e13a58.mat

MRN/sub-0027044/ses-2/label/catROIs_sub-0027044_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/wq/MD5E-s332164--8e9a7596866a806a9ebd2a2632bd902e.xml/MD5E-s332164--8e9a7596866a806a9ebd2a2632bd902e.xml

MRN/sub-0027044/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027044/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/2X/MD5E-s167076--fa74b75e754e793071d35f2fab8d63a0.nii.gz/MD5E-s167076--fa74b75e754e793071d35f2fab8d63a0.nii.gz

MRN/sub-0027044/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027044/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/QX/MD5E-s185917--b9629e0791ca6937973810dcebcfacf3.nii.gz/MD5E-s185917--b9629e0791ca6937973810dcebcfacf3.nii.gz

MRN/sub-0027044/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027044/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/Pv/MD5E-s248996--bbae87f4eed0dda1744d13d097ee79e9.nii.gz/MD5E-s248996--bbae87f4eed0dda1744d13d097ee79e9.nii.gz

MRN/sub-0027044/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027044/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/F5/MD5E-s276159--4513b4fe43e33fc330aaff33ab8e16cb.nii.gz/MD5E-s276159--4513b4fe43e33fc330aaff33ab8e16cb.nii.gz

MRN/sub-0027044/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027044/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/vK/MD5E-s25392--e71cf2a24e41a86b90751f6b17cd7734.nii.gz/MD5E-s25392--e71cf2a24e41a86b90751f6b17cd7734.nii.gz

MRN/sub-0027044/ses-2/mri/aal3_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027044/ses-2/mri/aal3_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/20/MD5E-s185835--e258e0d100f9d92a4ac542baa3cea310.nii.gz/MD5E-s185835--e258e0d100f9d92a4ac542baa3cea310.nii.gz

MRN/sub-0027044/ses-2/mri/anatomy3_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027044/ses-2/mri/anatomy3_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/67/MD5E-s138968--45c37400b2011a9b6746c9405b142733.nii.gz/MD5E-s138968--45c37400b2011a9b6746c9405b142733.nii.gz

MRN/sub-0027044/ses-2/mri/anon_misub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/p7/MD5E-s12173468--abec81b98e3bcd8acb907fd339abf653.nii.gz/MD5E-s12173468--abec81b98e3bcd8acb907fd339abf653.nii.gz

MRN/sub-0027044/ses-2/mri/anon_msub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PZ/Kx/MD5E-s13147570--8f091f723eeda06a9d93ae01ff3ab51d.nii.gz/MD5E-s13147570--8f091f723eeda06a9d93ae01ff3ab51d.nii.gz

MRN/sub-0027044/ses-2/mri/cat_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/w8/MD5E-s102128--22214a334aba7cf43ceff8b1ecc59842.nii.gz/MD5E-s102128--22214a334aba7cf43ceff8b1ecc59842.nii.gz

MRN/sub-0027044/ses-2/mri/cobra_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027044/ses-2/mri/cobra_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/mP/MD5E-s49134--b904bb5a569617043c14083053fd9ac8.nii.gz/MD5E-s49134--b904bb5a569617043c14083053fd9ac8.nii.gz

MRN/sub-0027044/ses-2/mri/hammers_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027044/ses-2/mri/hammers_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/gG/MD5E-s146431--2cf6a325f3a2289eef1181d27a731224.nii.gz/MD5E-s146431--2cf6a325f3a2289eef1181d27a731224.nii.gz

MRN/sub-0027044/ses-2/mri/ibsr_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027044/ses-2/mri/ibsr_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/wx/MD5E-s154701--be738d4aebf7d33fd1906303d7ce6ba3.nii.gz/MD5E-s154701--be738d4aebf7d33fd1906303d7ce6ba3.nii.gz

MRN/sub-0027044/ses-2/mri/it_sub-0027044_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XQ/9W/MD5E-s282--b54a15278ef4121aed0f866da0a061dc.mat/MD5E-s282--b54a15278ef4121aed0f866da0a061dc.mat

MRN/sub-0027044/ses-2/mri/it_sub-0027044_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/wf/MD5E-s283--1cc060486f47de7d677d7a9263aa4ea0.mat/MD5E-s283--1cc060486f47de7d677d7a9263aa4ea0.mat

MRN/sub-0027044/ses-2/mri/iy_sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/Pv/MD5E-s43184137--c656fd932bfe79c42c530e70d2eae511.nii.gz/MD5E-s43184137--c656fd932bfe79c42c530e70d2eae511.nii.gz

MRN/sub-0027044/ses-2/mri/julichbrain_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027044/ses-2/mri/julichbrain_sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/lpba40_sub-0027044_ses-2_run-1_T1w.csv

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MRN/sub-0027044/ses-2/mri/lpba40_sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/m0wp1sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/m0wp2sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/m0wp3sub-0027044_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027044/ses-2/mri/mori_sub-0027044_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027044/ses-2/mri/mori_sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/mwp1sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/mwp2sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/mwp3sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/neuromorphometrics_sub-0027044_ses-2_run-1_T1w.csv

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MRN/sub-0027044/ses-2/mri/neuromorphometrics_sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/p0sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/p1sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/p2sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/p3sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/rp1sub-0027044_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027044/ses-2/mri/rp2sub-0027044_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027044/ses-2/mri/rp3sub-0027044_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027044/ses-2/mri/t_sub-0027044_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027044/ses-2/mri/t_sub-0027044_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027044/ses-2/mri/thalamus_sub-0027044_ses-2_run-1_T1w.csv

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MRN/sub-0027044/ses-2/mri/thalamus_sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/wj_sub-0027044_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027044/ses-2/mri/wmisub-0027044_ses-2_run-1_T1w.nii.gz

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