[DATALAD RUNCMD] Compute MRN/sub-0027019/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027019/ses-1/anat/sub-0027019_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027019/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027019/ses-1/label/catROI_sub-0027019_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/kJ/MD5E-s61252--bdc283c9c433ba840b403dbefdabc00b.mat/MD5E-s61252--bdc283c9c433ba840b403dbefdabc00b.mat

MRN/sub-0027019/ses-1/label/catROI_sub-0027019_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/w3/MD5E-s188431--7042cc41f7d2b6c229b0c6db8fd98b21.xml/MD5E-s188431--7042cc41f7d2b6c229b0c6db8fd98b21.xml

MRN/sub-0027019/ses-1/label/catROIs_sub-0027019_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/Z2/MD5E-s120052--673c5808f93c1136c270a577c1571d71.mat/MD5E-s120052--673c5808f93c1136c270a577c1571d71.mat

MRN/sub-0027019/ses-1/label/catROIs_sub-0027019_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5j/zv/MD5E-s332173--9ddd425634aea78464163e732315740d.xml/MD5E-s332173--9ddd425634aea78464163e732315740d.xml

MRN/sub-0027019/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027019/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/08/MD5E-s191295--0642d11c22da105e9082f882d174772f.nii.gz/MD5E-s191295--0642d11c22da105e9082f882d174772f.nii.gz

MRN/sub-0027019/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027019/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xX/p8/MD5E-s214039--b1b353ead8fbd12505e0392216e24087.nii.gz/MD5E-s214039--b1b353ead8fbd12505e0392216e24087.nii.gz

MRN/sub-0027019/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027019/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/8W/MD5E-s284082--9137139301496459aa3460e2f669d582.nii.gz/MD5E-s284082--9137139301496459aa3460e2f669d582.nii.gz

MRN/sub-0027019/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027019/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/vP/MD5E-s315710--717b01fdf579d206453a0784cc20a0a4.nii.gz/MD5E-s315710--717b01fdf579d206453a0784cc20a0a4.nii.gz

MRN/sub-0027019/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027019/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/3V/MD5E-s26575--8991d3b372e68b96e71eb210d087147a.nii.gz/MD5E-s26575--8991d3b372e68b96e71eb210d087147a.nii.gz

MRN/sub-0027019/ses-1/mri/aal3_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027019/ses-1/mri/aal3_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/03/MD5E-s209820--a3d6838a3ab27be9dca9a2e4c01bcc3a.nii.gz/MD5E-s209820--a3d6838a3ab27be9dca9a2e4c01bcc3a.nii.gz

MRN/sub-0027019/ses-1/mri/anatomy3_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027019/ses-1/mri/anatomy3_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/J7/MD5E-s157627--5486d40babe21f3e2538cd722b843485.nii.gz/MD5E-s157627--5486d40babe21f3e2538cd722b843485.nii.gz

MRN/sub-0027019/ses-1/mri/anon_misub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/4v/MD5E-s10290958--9cd4ab21c4dbbfe9364f819403812078.nii.gz/MD5E-s10290958--9cd4ab21c4dbbfe9364f819403812078.nii.gz

MRN/sub-0027019/ses-1/mri/anon_msub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/w0/MD5E-s11951892--974686b5765523812bf0967410bd416a.nii.gz/MD5E-s11951892--974686b5765523812bf0967410bd416a.nii.gz

MRN/sub-0027019/ses-1/mri/cat_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/px/MD5E-s107842--6e78b3d22115b2e26bb419bdb9afa41f.nii.gz/MD5E-s107842--6e78b3d22115b2e26bb419bdb9afa41f.nii.gz

MRN/sub-0027019/ses-1/mri/cobra_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027019/ses-1/mri/cobra_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z0/Z2/MD5E-s51178--950763fdb58c701d84b0e195ec5caabc.nii.gz/MD5E-s51178--950763fdb58c701d84b0e195ec5caabc.nii.gz

MRN/sub-0027019/ses-1/mri/hammers_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027019/ses-1/mri/hammers_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/pF/MD5E-s165222--dadd2c8d327a2bd658517a75ae192284.nii.gz/MD5E-s165222--dadd2c8d327a2bd658517a75ae192284.nii.gz

MRN/sub-0027019/ses-1/mri/ibsr_sub-0027019_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027019/ses-1/mri/ibsr_sub-0027019_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/k1/MD5E-s174807--8e1e8cb81ff50b76b9f0dc386db1f8b0.nii.gz/MD5E-s174807--8e1e8cb81ff50b76b9f0dc386db1f8b0.nii.gz

MRN/sub-0027019/ses-1/mri/it_sub-0027019_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/XK/MD5E-s284--fe48233aa04f2a8cba30427972e44d71.mat/MD5E-s284--fe48233aa04f2a8cba30427972e44d71.mat

MRN/sub-0027019/ses-1/mri/it_sub-0027019_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/3M/MD5E-s283--c748c245f82029191e77769fb27105c4.mat/MD5E-s283--c748c245f82029191e77769fb27105c4.mat

MRN/sub-0027019/ses-1/mri/iy_sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/julichbrain_sub-0027019_ses-1_run-1_T1w.csv

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MRN/sub-0027019/ses-1/mri/julichbrain_sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/lpba40_sub-0027019_ses-1_run-1_T1w.csv

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MRN/sub-0027019/ses-1/mri/lpba40_sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/m0wp1sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/m0wp2sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/m0wp3sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/mori_sub-0027019_ses-1_run-1_T1w.csv

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MRN/sub-0027019/ses-1/mri/mori_sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/mwp1sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/mwp2sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/mwp3sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/neuromorphometrics_sub-0027019_ses-1_run-1_T1w.csv

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MRN/sub-0027019/ses-1/mri/neuromorphometrics_sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/p0sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/p1sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/p2sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/p3sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/rp1sub-0027019_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027019/ses-1/mri/rp2sub-0027019_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027019/ses-1/mri/rp3sub-0027019_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027019/ses-1/mri/t_sub-0027019_ses-1_run-1_T1w_affine_reorient.mat

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MRN/sub-0027019/ses-1/mri/t_sub-0027019_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027019/ses-1/mri/thalamus_sub-0027019_ses-1_run-1_T1w.csv

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MRN/sub-0027019/ses-1/mri/thalamus_sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/wj_sub-0027019_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027019/ses-1/mri/wmisub-0027019_ses-1_run-1_T1w.nii.gz

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