[DATALAD RUNCMD] Compute SWU_4/sub-0025648/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025648/ses-2/anat/sub-0025648_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025648/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025648/ses-2/label/catROI_sub-0025648_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qF/qx/MD5E-s61192--01a39487d4acb238cb6e8edc6e6f50bb.mat/MD5E-s61192--01a39487d4acb238cb6e8edc6e6f50bb.mat

SWU_4/sub-0025648/ses-2/label/catROI_sub-0025648_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kF/w4/MD5E-s188924--94c5f61e7a3fec1c9ce8416b9942762e.xml/MD5E-s188924--94c5f61e7a3fec1c9ce8416b9942762e.xml

SWU_4/sub-0025648/ses-2/label/catROIs_sub-0025648_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V4/3J/MD5E-s119986--2e7a1cfba17e1d6f9250df4ef8d219ee.mat/MD5E-s119986--2e7a1cfba17e1d6f9250df4ef8d219ee.mat

SWU_4/sub-0025648/ses-2/label/catROIs_sub-0025648_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/jW/MD5E-s332158--624f37defea74c361300b59e755ddc5f.xml/MD5E-s332158--624f37defea74c361300b59e755ddc5f.xml

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/FJ/MD5E-s156369--644960384d2a3ad0a519d29f1f8f986d.nii.gz/MD5E-s156369--644960384d2a3ad0a519d29f1f8f986d.nii.gz

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/zv/MD5E-s175788--3d76a446e490ca5c6b22fbab5d03bbf5.nii.gz/MD5E-s175788--3d76a446e490ca5c6b22fbab5d03bbf5.nii.gz

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/fX/MD5E-s236893--8276e7babbf204dab572dd9336b8d177.nii.gz/MD5E-s236893--8276e7babbf204dab572dd9336b8d177.nii.gz

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025648/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/W8/MD5E-s264076--e90c9cc2aa912cf7782ade8d5924fc09.nii.gz/MD5E-s264076--e90c9cc2aa912cf7782ade8d5924fc09.nii.gz

SWU_4/sub-0025648/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025648/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/Qg/MD5E-s24096--c33ce6846d7cfac3eb312aa220693658.nii.gz/MD5E-s24096--c33ce6846d7cfac3eb312aa220693658.nii.gz

SWU_4/sub-0025648/ses-2/mri/aal3_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025648/ses-2/mri/aal3_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/vq/MD5E-s179050--62b9ae1af94793f8ea4cda380fdf8919.nii.gz/MD5E-s179050--62b9ae1af94793f8ea4cda380fdf8919.nii.gz

SWU_4/sub-0025648/ses-2/mri/anatomy3_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025648/ses-2/mri/anatomy3_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/kq/MD5E-s128343--275612db109a4b9a0f4ead54e85cd765.nii.gz/MD5E-s128343--275612db109a4b9a0f4ead54e85cd765.nii.gz

SWU_4/sub-0025648/ses-2/mri/anon_misub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/Vk/MD5E-s9051569--03c1e5be2b85e440228e95e08b91be88.nii.gz/MD5E-s9051569--03c1e5be2b85e440228e95e08b91be88.nii.gz

SWU_4/sub-0025648/ses-2/mri/anon_msub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/3q/MD5E-s10517822--ae4960addac39e70dc240b871ba47f80.nii.gz/MD5E-s10517822--ae4960addac39e70dc240b871ba47f80.nii.gz

SWU_4/sub-0025648/ses-2/mri/cat_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/k6/MD5E-s96930--875af5c7176bdcff889769562c4c950e.nii.gz/MD5E-s96930--875af5c7176bdcff889769562c4c950e.nii.gz

SWU_4/sub-0025648/ses-2/mri/cobra_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025648/ses-2/mri/cobra_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/Kk/MD5E-s48268--031adbc195874cb802333b4bbdd03057.nii.gz/MD5E-s48268--031adbc195874cb802333b4bbdd03057.nii.gz

SWU_4/sub-0025648/ses-2/mri/hammers_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025648/ses-2/mri/hammers_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wQ/zZ/MD5E-s140662--3603f2d3f53d665497d97f7e7d1a2dd4.nii.gz/MD5E-s140662--3603f2d3f53d665497d97f7e7d1a2dd4.nii.gz

SWU_4/sub-0025648/ses-2/mri/ibsr_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025648/ses-2/mri/ibsr_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/4g/MD5E-s148250--496b06928638ce5d9343d85492b6b8fe.nii.gz/MD5E-s148250--496b06928638ce5d9343d85492b6b8fe.nii.gz

SWU_4/sub-0025648/ses-2/mri/it_sub-0025648_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/K7/MD5E-s285--0cd47abaec1a22dc4887bd0998783615.mat/MD5E-s285--0cd47abaec1a22dc4887bd0998783615.mat

SWU_4/sub-0025648/ses-2/mri/it_sub-0025648_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/92/G2/MD5E-s282--a78e50287ff908fb7187dc64acca5c40.mat/MD5E-s282--a78e50287ff908fb7187dc64acca5c40.mat

SWU_4/sub-0025648/ses-2/mri/iy_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/2K/MD5E-s42623969--79d7aef5100a8a92aa43efc320bf8916.nii.gz/MD5E-s42623969--79d7aef5100a8a92aa43efc320bf8916.nii.gz

SWU_4/sub-0025648/ses-2/mri/julichbrain_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025648/ses-2/mri/julichbrain_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/qq/MD5E-s187717--8ce4a92b85aa1f3e74064320f36434de.nii.gz/MD5E-s187717--8ce4a92b85aa1f3e74064320f36434de.nii.gz

SWU_4/sub-0025648/ses-2/mri/lpba40_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025648/ses-2/mri/lpba40_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/57/MD5E-s137087--6b1dad08eb22e8a387b659d7f0bdbfb1.nii.gz/MD5E-s137087--6b1dad08eb22e8a387b659d7f0bdbfb1.nii.gz

SWU_4/sub-0025648/ses-2/mri/m0wp1sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/Fk/MD5E-s2576624--6e296d7f96764240a30ce78c7a229281.nii.gz/MD5E-s2576624--6e296d7f96764240a30ce78c7a229281.nii.gz

SWU_4/sub-0025648/ses-2/mri/m0wp2sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/Gj/MD5E-s2296306--3c7c640bbb9231b85a14c644801fb112.nii.gz/MD5E-s2296306--3c7c640bbb9231b85a14c644801fb112.nii.gz

SWU_4/sub-0025648/ses-2/mri/m0wp3sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/mK/MD5E-s2593821--bb6bb8a772be4002f2c3b0e7e4ab9f58.nii.gz/MD5E-s2593821--bb6bb8a772be4002f2c3b0e7e4ab9f58.nii.gz

SWU_4/sub-0025648/ses-2/mri/mori_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025648/ses-2/mri/mori_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/57/MD5E-s163934--cca8d1d10fb8e349f1311816119385af.nii.gz/MD5E-s163934--cca8d1d10fb8e349f1311816119385af.nii.gz

SWU_4/sub-0025648/ses-2/mri/mwp1sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/QQ/MD5E-s2584126--064ad1c8233751c17eea7dac3a2950e1.nii.gz/MD5E-s2584126--064ad1c8233751c17eea7dac3a2950e1.nii.gz

SWU_4/sub-0025648/ses-2/mri/mwp2sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/KF/MD5E-s2303722--e1bd0e3c323783df8f53cf40986450ea.nii.gz/MD5E-s2303722--e1bd0e3c323783df8f53cf40986450ea.nii.gz

SWU_4/sub-0025648/ses-2/mri/mwp3sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/21/MD5E-s2592753--b05fa1a2de7d3dc5de33323c36705e8e.nii.gz/MD5E-s2592753--b05fa1a2de7d3dc5de33323c36705e8e.nii.gz

SWU_4/sub-0025648/ses-2/mri/neuromorphometrics_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025648/ses-2/mri/neuromorphometrics_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025648/ses-2/mri/p0sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/xm/MD5E-s601256--eef038028b82a69a44a4ce66a164aed8.nii.gz/MD5E-s601256--eef038028b82a69a44a4ce66a164aed8.nii.gz

SWU_4/sub-0025648/ses-2/mri/p1sub-0025648_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025648/ses-2/mri/p2sub-0025648_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025648/ses-2/mri/p3sub-0025648_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025648/ses-2/mri/rp1sub-0025648_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025648/ses-2/mri/rp2sub-0025648_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025648/ses-2/mri/rp3sub-0025648_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025648/ses-2/mri/t_sub-0025648_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025648/ses-2/mri/t_sub-0025648_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/P6/MD5E-s283--5dd79a7b9327525a1467565d1cf08b48.mat/MD5E-s283--5dd79a7b9327525a1467565d1cf08b48.mat

SWU_4/sub-0025648/ses-2/mri/thalamus_sub-0025648_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025648/ses-2/mri/thalamus_sub-0025648_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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