[DATALAD RUNCMD] Compute NYU_2/sub-0025171/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025171/ses-1/anat/sub-0025171_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025171/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025171/ses-1/label/catROI_sub-0025171_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/QZ/MD5E-s57676--596b7860aa0984cec0b04f02380fee6f.mat/MD5E-s57676--596b7860aa0984cec0b04f02380fee6f.mat

NYU_2/sub-0025171/ses-1/label/catROI_sub-0025171_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/Ww/MD5E-s189349--0c9dd92e240b45c48561e4b589a7b4a3.xml/MD5E-s189349--0c9dd92e240b45c48561e4b589a7b4a3.xml

NYU_2/sub-0025171/ses-1/label/catROIs_sub-0025171_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/Pj/MD5E-s120216--5f9e2d6e7439bfd2fe36a79777fef559.mat/MD5E-s120216--5f9e2d6e7439bfd2fe36a79777fef559.mat

NYU_2/sub-0025171/ses-1/label/catROIs_sub-0025171_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/mf/MD5E-s332123--1339e03ac45674d610bcd3985baef241.xml/MD5E-s332123--1339e03ac45674d610bcd3985baef241.xml

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WW/jg/MD5E-s127880--7615fce37ddc8577b15d6510588f5487.nii.gz/MD5E-s127880--7615fce37ddc8577b15d6510588f5487.nii.gz

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/11/MD5E-s145173--045da11f95b15f841a4e4c878b1612ee.nii.gz/MD5E-s145173--045da11f95b15f841a4e4c878b1612ee.nii.gz

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/9g/MD5E-s193095--979f4689ef4be43795afef7e871dcb48.nii.gz/MD5E-s193095--979f4689ef4be43795afef7e871dcb48.nii.gz

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025171/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/w7/MD5E-s216058--f4a6c5f839d3877da8adecfb3bb22475.nii.gz/MD5E-s216058--f4a6c5f839d3877da8adecfb3bb22475.nii.gz

NYU_2/sub-0025171/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025171/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/xZ/MD5E-s18567--0d44cc59eb9ea2dbc07c96518c599c4a.nii.gz/MD5E-s18567--0d44cc59eb9ea2dbc07c96518c599c4a.nii.gz

NYU_2/sub-0025171/ses-1/mri/aal3_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025171/ses-1/mri/aal3_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/KX/MD5E-s151105--b2ed643d975214eea918062ad18039e0.nii.gz/MD5E-s151105--b2ed643d975214eea918062ad18039e0.nii.gz

NYU_2/sub-0025171/ses-1/mri/anatomy3_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025171/ses-1/mri/anatomy3_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/9X/MD5E-s101925--b2507c4367205365c60cdef1738b5cf1.nii.gz/MD5E-s101925--b2507c4367205365c60cdef1738b5cf1.nii.gz

NYU_2/sub-0025171/ses-1/mri/anon_misub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/79/MD5E-s3872255--41c6458c054a0b26b368ebdadf603952.nii.gz/MD5E-s3872255--41c6458c054a0b26b368ebdadf603952.nii.gz

NYU_2/sub-0025171/ses-1/mri/anon_msub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/Mj/MD5E-s9033192--812044e651ab894a396b6392ac7a08ff.nii.gz/MD5E-s9033192--812044e651ab894a396b6392ac7a08ff.nii.gz

NYU_2/sub-0025171/ses-1/mri/cat_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/p5/MD5E-s78516--29feb7e318316384d72640ff1193f55e.nii.gz/MD5E-s78516--29feb7e318316384d72640ff1193f55e.nii.gz

NYU_2/sub-0025171/ses-1/mri/cobra_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025171/ses-1/mri/cobra_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/zm/MD5E-s38068--d57a7a4125973ffcfe57c5008743aa15.nii.gz/MD5E-s38068--d57a7a4125973ffcfe57c5008743aa15.nii.gz

NYU_2/sub-0025171/ses-1/mri/hammers_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025171/ses-1/mri/hammers_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/6z/MD5E-s113838--dac2d11564a5a739eb42756ba0227aaf.nii.gz/MD5E-s113838--dac2d11564a5a739eb42756ba0227aaf.nii.gz

NYU_2/sub-0025171/ses-1/mri/ibsr_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025171/ses-1/mri/ibsr_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/XV/MD5E-s120108--7f6d2bca4907d5d8b7af5f1064cb8f5e.nii.gz/MD5E-s120108--7f6d2bca4907d5d8b7af5f1064cb8f5e.nii.gz

NYU_2/sub-0025171/ses-1/mri/it_sub-0025171_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/q0/MD5E-s284--bea605495f9d4d1f46a8b758e18b955b.mat/MD5E-s284--bea605495f9d4d1f46a8b758e18b955b.mat

NYU_2/sub-0025171/ses-1/mri/it_sub-0025171_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/fG/MD5E-s284--2891ecc9141f4f1fa4c6f18b7259e95d.mat/MD5E-s284--2891ecc9141f4f1fa4c6f18b7259e95d.mat

NYU_2/sub-0025171/ses-1/mri/iy_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/Vk/MD5E-s30757436--19a8c7e105999b528c5f1544026b9ded.nii.gz/MD5E-s30757436--19a8c7e105999b528c5f1544026b9ded.nii.gz

NYU_2/sub-0025171/ses-1/mri/julichbrain_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025171/ses-1/mri/julichbrain_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/75/MD5E-s153358--7e2ad8093d3f75e1996cc559378d9f5b.nii.gz/MD5E-s153358--7e2ad8093d3f75e1996cc559378d9f5b.nii.gz

NYU_2/sub-0025171/ses-1/mri/lpba40_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025171/ses-1/mri/lpba40_sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/m0wp1sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/m0wp2sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ww/52/MD5E-s2285028--4874172b2162333f5c2ad27a4d529c5e.nii.gz/MD5E-s2285028--4874172b2162333f5c2ad27a4d529c5e.nii.gz

NYU_2/sub-0025171/ses-1/mri/m0wp3sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025171/ses-1/mri/mori_sub-0025171_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025171/ses-1/mri/mori_sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025171/ses-1/mri/mwp1sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/P1/MD5E-s2587939--4192ffb9a18f40ea922c680f76765ef9.nii.gz/MD5E-s2587939--4192ffb9a18f40ea922c680f76765ef9.nii.gz

NYU_2/sub-0025171/ses-1/mri/mwp2sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/mwp3sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025171/ses-1/mri/neuromorphometrics_sub-0025171_ses-1_run-1_T1w.csv

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NYU_2/sub-0025171/ses-1/mri/neuromorphometrics_sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/p0sub-0025171_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025171/ses-1/mri/p1sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/p2sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/p3sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/rp1sub-0025171_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025171/ses-1/mri/rp2sub-0025171_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025171/ses-1/mri/rp3sub-0025171_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025171/ses-1/mri/t_sub-0025171_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025171/ses-1/mri/t_sub-0025171_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025171/ses-1/mri/thalamus_sub-0025171_ses-1_run-1_T1w.csv

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NYU_2/sub-0025171/ses-1/mri/thalamus_sub-0025171_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025171/ses-1/mri/wj_sub-0025171_ses-1_run-1_T1w.nii.gz

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