[DATALAD RUNCMD] Compute NYU_2/sub-0025017/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025017/ses-1/anat/sub-0025017_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025017/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025017/ses-1/label/catROI_sub-0025017_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/q9/MD5E-s57754--cff0f71f9f7c112f3be4970c3c054ca2.mat/MD5E-s57754--cff0f71f9f7c112f3be4970c3c054ca2.mat

NYU_2/sub-0025017/ses-1/label/catROI_sub-0025017_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/Pq/MD5E-s188878--40ff030149220a9dfd5618485ca3a171.xml/MD5E-s188878--40ff030149220a9dfd5618485ca3a171.xml

NYU_2/sub-0025017/ses-1/label/catROI_sub-0025017_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PG/pW/MD5E-s57720--c270d39d7f95ab181ce2bbcc72e8362c.mat/MD5E-s57720--c270d39d7f95ab181ce2bbcc72e8362c.mat

NYU_2/sub-0025017/ses-1/label/catROI_sub-0025017_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7g/W8/MD5E-s188933--a19490deec2d62eecaf7c481c9c6306e.xml/MD5E-s188933--a19490deec2d62eecaf7c481c9c6306e.xml

NYU_2/sub-0025017/ses-1/label/catROIs_sub-0025017_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/W8/MD5E-s120367--5c0fe2734f549cce362705cebd1a9eb3.mat/MD5E-s120367--5c0fe2734f549cce362705cebd1a9eb3.mat

NYU_2/sub-0025017/ses-1/label/catROIs_sub-0025017_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/1V/MD5E-s332187--5851f9f0d6a8aa32a9f127e9301c3641.xml/MD5E-s332187--5851f9f0d6a8aa32a9f127e9301c3641.xml

NYU_2/sub-0025017/ses-1/label/catROIs_sub-0025017_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1M/V7/MD5E-s120379--ee5203b505fcd6931e395ff0565fc3ef.mat/MD5E-s120379--ee5203b505fcd6931e395ff0565fc3ef.mat

NYU_2/sub-0025017/ses-1/label/catROIs_sub-0025017_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4v/JF/MD5E-s332119--2bcc58294caadca6623377e3f8f1ee87.xml/MD5E-s332119--2bcc58294caadca6623377e3f8f1ee87.xml

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/V4/MD5E-s131557--026117deb49edaeb872e1708e3ee44b6.nii.gz/MD5E-s131557--026117deb49edaeb872e1708e3ee44b6.nii.gz

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3V/37/MD5E-s131261--88752ac9a3a247e70e021a687f914dca.nii.gz/MD5E-s131261--88752ac9a3a247e70e021a687f914dca.nii.gz

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/v1/MD5E-s148393--ff2994b301b49e29d7fb236b2dc0c3c3.nii.gz/MD5E-s148393--ff2994b301b49e29d7fb236b2dc0c3c3.nii.gz

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k0/XZ/MD5E-s148061--6d4c52e8325279bb93546f7ea813b293.nii.gz/MD5E-s148061--6d4c52e8325279bb93546f7ea813b293.nii.gz

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/v8/MD5E-s196789--bda694ebe1c59dfd097861193474d4e8.nii.gz/MD5E-s196789--bda694ebe1c59dfd097861193474d4e8.nii.gz

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Ff/fK/MD5E-s196561--72269fa9f1be84fbc92c9a3ae98c556e.nii.gz/MD5E-s196561--72269fa9f1be84fbc92c9a3ae98c556e.nii.gz

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/Vq/MD5E-s220004--9e8656008ba87b8f2ce115cda8cd1c80.nii.gz/MD5E-s220004--9e8656008ba87b8f2ce115cda8cd1c80.nii.gz

NYU_2/sub-0025017/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mP/0P/MD5E-s219023--5ac4acfa9e1ce064aae3d1b3aeeb5b1b.nii.gz/MD5E-s219023--5ac4acfa9e1ce064aae3d1b3aeeb5b1b.nii.gz

NYU_2/sub-0025017/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/3w/MD5E-s18554--32ebb4b5f261b6f8550539180c3a1be3.nii.gz/MD5E-s18554--32ebb4b5f261b6f8550539180c3a1be3.nii.gz

NYU_2/sub-0025017/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w6/kw/MD5E-s18487--0fe23d329a2a1fb769da0f0d3a764cb6.nii.gz/MD5E-s18487--0fe23d329a2a1fb769da0f0d3a764cb6.nii.gz

NYU_2/sub-0025017/ses-1/mri/aal3_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/5w/MD5E-s148967--dadf32d7074c5721f82a0722c6dfc823.nii.gz/MD5E-s148967--dadf32d7074c5721f82a0722c6dfc823.nii.gz

NYU_2/sub-0025017/ses-1/mri/aal3_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7K/K1/MD5E-s148306--2c02d4fd524b70bb82206f84e33375a8.nii.gz/MD5E-s148306--2c02d4fd524b70bb82206f84e33375a8.nii.gz

NYU_2/sub-0025017/ses-1/mri/anatomy3_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/jJ/MD5E-s105873--a857c3068c5330a86fc9ce741de39d91.nii.gz/MD5E-s105873--a857c3068c5330a86fc9ce741de39d91.nii.gz

NYU_2/sub-0025017/ses-1/mri/anatomy3_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gg/1X/MD5E-s105756--d43bdc81af3de7bd30f72a5f6aa49dcc.nii.gz/MD5E-s105756--d43bdc81af3de7bd30f72a5f6aa49dcc.nii.gz

NYU_2/sub-0025017/ses-1/mri/anon_misub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/9Z/MD5E-s2968538--d65c43e2efd2bf5f430ad8badf646d67.nii.gz/MD5E-s2968538--d65c43e2efd2bf5f430ad8badf646d67.nii.gz

NYU_2/sub-0025017/ses-1/mri/anon_misub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PP/01/MD5E-s2974540--703035f1c4d1db542ef6e7f69101111b.nii.gz/MD5E-s2974540--703035f1c4d1db542ef6e7f69101111b.nii.gz

NYU_2/sub-0025017/ses-1/mri/anon_msub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/X2/MD5E-s8175402--6f7752eb7eb0493950115e5aa1a5fcbd.nii.gz/MD5E-s8175402--6f7752eb7eb0493950115e5aa1a5fcbd.nii.gz

NYU_2/sub-0025017/ses-1/mri/anon_msub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K9/FP/MD5E-s7760995--21ff8b23ab49a767d3a844c34f07612f.nii.gz/MD5E-s7760995--21ff8b23ab49a767d3a844c34f07612f.nii.gz

NYU_2/sub-0025017/ses-1/mri/cat_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/Pm/MD5E-s80412--a161d15202a003eff7fcfa95820d062b.nii.gz/MD5E-s80412--a161d15202a003eff7fcfa95820d062b.nii.gz

NYU_2/sub-0025017/ses-1/mri/cat_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/83/QK/MD5E-s80168--4ff18b631dba466536a57906aec0423b.nii.gz/MD5E-s80168--4ff18b631dba466536a57906aec0423b.nii.gz

NYU_2/sub-0025017/ses-1/mri/cobra_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/zz/MD5E-s37851--d154093dbc639112420c775096fe0860.nii.gz/MD5E-s37851--d154093dbc639112420c775096fe0860.nii.gz

NYU_2/sub-0025017/ses-1/mri/cobra_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FK/K6/MD5E-s37788--5e66ef99505f89bc82fab999dd63ab7b.nii.gz/MD5E-s37788--5e66ef99505f89bc82fab999dd63ab7b.nii.gz

NYU_2/sub-0025017/ses-1/mri/hammers_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/5z/MD5E-s117338--eca0944e2b268f4c32327dbad99cd48c.nii.gz/MD5E-s117338--eca0944e2b268f4c32327dbad99cd48c.nii.gz

NYU_2/sub-0025017/ses-1/mri/hammers_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025017/ses-1/mri/ibsr_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/8q/MD5E-s121665--5e171ff9993ef99de26e7f177abe431e.nii.gz/MD5E-s121665--5e171ff9993ef99de26e7f177abe431e.nii.gz

NYU_2/sub-0025017/ses-1/mri/ibsr_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025017/ses-1/mri/it_sub-0025017_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kF/jm/MD5E-s283--f47db7ae14bb06b3a4fde61326040a84.mat/MD5E-s283--f47db7ae14bb06b3a4fde61326040a84.mat

NYU_2/sub-0025017/ses-1/mri/it_sub-0025017_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/pg/MD5E-s283--5f1b4ee11bebf9d56801282c3bf93b63.mat/MD5E-s283--5f1b4ee11bebf9d56801282c3bf93b63.mat

NYU_2/sub-0025017/ses-1/mri/it_sub-0025017_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/08/Qx/MD5E-s283--6d7e7dc52e63da7c0da20195f9268864.mat/MD5E-s283--6d7e7dc52e63da7c0da20195f9268864.mat

NYU_2/sub-0025017/ses-1/mri/it_sub-0025017_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K6/xv/MD5E-s285--38501503629ca77c3555486ce9088885.mat/MD5E-s285--38501503629ca77c3555486ce9088885.mat

NYU_2/sub-0025017/ses-1/mri/iy_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/m5/MD5E-s27171642--706b806ff3a9f05e5bd25c3d635f320f.nii.gz/MD5E-s27171642--706b806ff3a9f05e5bd25c3d635f320f.nii.gz

NYU_2/sub-0025017/ses-1/mri/iy_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025017/ses-1/mri/julichbrain_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/8K/MD5E-s157161--557c69d428f70aad3dacfe97bed2e5a1.nii.gz/MD5E-s157161--557c69d428f70aad3dacfe97bed2e5a1.nii.gz

NYU_2/sub-0025017/ses-1/mri/julichbrain_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025017/ses-1/mri/lpba40_sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/0z/MD5E-s114596--1ea809b58787071fbb47927539c8511f.nii.gz/MD5E-s114596--1ea809b58787071fbb47927539c8511f.nii.gz

NYU_2/sub-0025017/ses-1/mri/lpba40_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025017/ses-1/mri/m0wp1sub-0025017_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025017/ses-1/mri/m0wp1sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025017/ses-1/mri/m0wp2sub-0025017_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025017/ses-1/mri/m0wp2sub-0025017_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025017/ses-1/mri/m0wp3sub-0025017_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025017/ses-1/mri/m0wp3sub-0025017_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025017/ses-1/mri/mori_sub-0025017_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025017/ses-1/mri/mori_sub-0025017_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025017/ses-1/mri/mwp1sub-0025017_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025017/ses-1/mri/mwp1sub-0025017_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025017/ses-1/mri/mwp2sub-0025017_ses-1_run-1_T1w.nii.gz

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