[DATALAD RUNCMD] Compute BNU_2/sub-0025926/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025926/ses-2/anat/sub-0025926_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025926/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025926/ses-2/label/catROI_sub-0025926_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/24/MD5E-s58203--fa42550e21c621ce4b829b7b72386b71.mat/MD5E-s58203--fa42550e21c621ce4b829b7b72386b71.mat

BNU_2/sub-0025926/ses-2/label/catROI_sub-0025926_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/2P/MD5E-s188528--78d21eb63b1fb2f05932d3e69484d4ad.xml/MD5E-s188528--78d21eb63b1fb2f05932d3e69484d4ad.xml

BNU_2/sub-0025926/ses-2/label/catROIs_sub-0025926_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/65/MD5E-s120136--bb58653cfd29dcc67c3103e3387c13b9.mat/MD5E-s120136--bb58653cfd29dcc67c3103e3387c13b9.mat

BNU_2/sub-0025926/ses-2/label/catROIs_sub-0025926_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/3W/MD5E-s332090--7fe16fbfdfe679c726891a0c0fda3252.xml/MD5E-s332090--7fe16fbfdfe679c726891a0c0fda3252.xml

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/Jp/MD5E-s177971--33e2b24c9cd56e1fb344081ee1a03898.nii.gz/MD5E-s177971--33e2b24c9cd56e1fb344081ee1a03898.nii.gz

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/JP/MD5E-s197495--2931e256d5438050d3a7831d37192d47.nii.gz/MD5E-s197495--2931e256d5438050d3a7831d37192d47.nii.gz

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/p8/MD5E-s267012--d0922c1e016a26f1fb816f7fb7826ecd.nii.gz/MD5E-s267012--d0922c1e016a26f1fb816f7fb7826ecd.nii.gz

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025926/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/jm/MD5E-s294614--64abbe03733eedf0834570b92339a7de.nii.gz/MD5E-s294614--64abbe03733eedf0834570b92339a7de.nii.gz

BNU_2/sub-0025926/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025926/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mz/Vf/MD5E-s26317--f859bf197ccad78e5d387704b2109af7.nii.gz/MD5E-s26317--f859bf197ccad78e5d387704b2109af7.nii.gz

BNU_2/sub-0025926/ses-2/mri/aal3_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025926/ses-2/mri/aal3_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/8v/MD5E-s200940--a9879f124fa5f41670303b2b9e0c6744.nii.gz/MD5E-s200940--a9879f124fa5f41670303b2b9e0c6744.nii.gz

BNU_2/sub-0025926/ses-2/mri/anatomy3_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025926/ses-2/mri/anatomy3_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f2/2f/MD5E-s146481--3f3e97ffe3614c727a388c3fcd81ec79.nii.gz/MD5E-s146481--3f3e97ffe3614c727a388c3fcd81ec79.nii.gz

BNU_2/sub-0025926/ses-2/mri/anon_misub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/mq/MD5E-s4931066--38387d08a08b6c7b325acdcb5924d264.nii.gz/MD5E-s4931066--38387d08a08b6c7b325acdcb5924d264.nii.gz

BNU_2/sub-0025926/ses-2/mri/anon_msub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/gz/MD5E-s11231826--7d9484977a5d3e41cffdc072a6825182.nii.gz/MD5E-s11231826--7d9484977a5d3e41cffdc072a6825182.nii.gz

BNU_2/sub-0025926/ses-2/mri/cat_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/Gw/MD5E-s108141--f7e6fc6f2ea74cd520d466db968f09b2.nii.gz/MD5E-s108141--f7e6fc6f2ea74cd520d466db968f09b2.nii.gz

BNU_2/sub-0025926/ses-2/mri/cobra_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025926/ses-2/mri/cobra_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Z/1Q/MD5E-s53298--c1ebfb3691661606706cd5421d0a3f9c.nii.gz/MD5E-s53298--c1ebfb3691661606706cd5421d0a3f9c.nii.gz

BNU_2/sub-0025926/ses-2/mri/hammers_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025926/ses-2/mri/hammers_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/KX/MD5E-s160062--b7cbe771e54af46738ff50ecb3bd356d.nii.gz/MD5E-s160062--b7cbe771e54af46738ff50ecb3bd356d.nii.gz

BNU_2/sub-0025926/ses-2/mri/ibsr_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025926/ses-2/mri/ibsr_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/p9/MD5E-s167973--85eeee7d62b65558469a0b7a063e8fbb.nii.gz/MD5E-s167973--85eeee7d62b65558469a0b7a063e8fbb.nii.gz

BNU_2/sub-0025926/ses-2/mri/it_sub-0025926_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/v9/MD5E-s284--2b36a2d41b2b97fc03935d98db0ce425.mat/MD5E-s284--2b36a2d41b2b97fc03935d98db0ce425.mat

BNU_2/sub-0025926/ses-2/mri/it_sub-0025926_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/Vm/MD5E-s283--05ba7ae00a839384032ec7189d02e4f6.mat/MD5E-s283--05ba7ae00a839384032ec7189d02e4f6.mat

BNU_2/sub-0025926/ses-2/mri/iy_sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/kq/MD5E-s52901242--0a22d7565f88d8fbb9b6e3ca93cf140f.nii.gz/MD5E-s52901242--0a22d7565f88d8fbb9b6e3ca93cf140f.nii.gz

BNU_2/sub-0025926/ses-2/mri/julichbrain_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025926/ses-2/mri/julichbrain_sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/lpba40_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025926/ses-2/mri/lpba40_sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/m0wp1sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/74/MD5E-s2568450--5da02e812fa7838043a0feba87a9d707.nii.gz/MD5E-s2568450--5da02e812fa7838043a0feba87a9d707.nii.gz

BNU_2/sub-0025926/ses-2/mri/m0wp2sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025926/ses-2/mri/m0wp3sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/Xw/MD5E-s2446586--e4212f13615d51f636a64df25ac5d506.nii.gz/MD5E-s2446586--e4212f13615d51f636a64df25ac5d506.nii.gz

BNU_2/sub-0025926/ses-2/mri/mori_sub-0025926_ses-2_run-1_T1w.csv

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BNU_2/sub-0025926/ses-2/mri/mori_sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/mwp1sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/mwp2sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025926/ses-2/mri/mwp3sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/neuromorphometrics_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025926/ses-2/mri/neuromorphometrics_sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/p0sub-0025926_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025926/ses-2/mri/p1sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/p2sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/p3sub-0025926_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025926/ses-2/mri/rp1sub-0025926_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025926/ses-2/mri/rp2sub-0025926_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025926/ses-2/mri/rp3sub-0025926_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025926/ses-2/mri/t_sub-0025926_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025926/ses-2/mri/t_sub-0025926_ses-2_run-1_T1w_rigid_reorient.mat

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BNU_2/sub-0025926/ses-2/mri/thalamus_sub-0025926_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025926/ses-2/mri/thalamus_sub-0025926_ses-2_run-1_T1w.nii.gz

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