[DATALAD RUNCMD] Compute SWU_2/sub-0027178/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027178/ses-1/anat/sub-0027178_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027178/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027178/ses-1/label/catROI_sub-0027178_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/kj/MD5E-s61335--fdca183ae10cc11b8945e260e6a5be19.mat/MD5E-s61335--fdca183ae10cc11b8945e260e6a5be19.mat

SWU_2/sub-0027178/ses-1/label/catROI_sub-0027178_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/F7/MD5E-s189099--60e3e0be0f40f6067a1315799a127814.xml/MD5E-s189099--60e3e0be0f40f6067a1315799a127814.xml

SWU_2/sub-0027178/ses-1/label/catROIs_sub-0027178_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/wP/MD5E-s120012--8e3083410f107fe13c1307a6ad1dcdcc.mat/MD5E-s120012--8e3083410f107fe13c1307a6ad1dcdcc.mat

SWU_2/sub-0027178/ses-1/label/catROIs_sub-0027178_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/QJ/MD5E-s332112--bca4282e175903a045e093df74a3d9a4.xml/MD5E-s332112--bca4282e175903a045e093df74a3d9a4.xml

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/vw/MD5E-s162447--2cbac8041823d7330759724be7964c1b.nii.gz/MD5E-s162447--2cbac8041823d7330759724be7964c1b.nii.gz

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jf/Wz/MD5E-s181315--a00d285936a141cede458f636ab654ab.nii.gz/MD5E-s181315--a00d285936a141cede458f636ab654ab.nii.gz

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/mp/MD5E-s244826--413914fa1db6bc53b6264a111da8be65.nii.gz/MD5E-s244826--413914fa1db6bc53b6264a111da8be65.nii.gz

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027178/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XG/jJ/MD5E-s272380--c3460936da53540ba2a0be330cb7e4e6.nii.gz/MD5E-s272380--c3460936da53540ba2a0be330cb7e4e6.nii.gz

SWU_2/sub-0027178/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_2/sub-0027178/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/Pm/MD5E-s24259--379a30fabf4c83e6b3008fee02024a87.nii.gz/MD5E-s24259--379a30fabf4c83e6b3008fee02024a87.nii.gz

SWU_2/sub-0027178/ses-1/mri/aal3_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_2/sub-0027178/ses-1/mri/aal3_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/J3/MD5E-s184580--b9ec31c86d1bc81fb4562acdb712b538.nii.gz/MD5E-s184580--b9ec31c86d1bc81fb4562acdb712b538.nii.gz

SWU_2/sub-0027178/ses-1/mri/anatomy3_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027178/ses-1/mri/anatomy3_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/1g/MD5E-s132518--e57ee5400596e064a72b06b0f7065ade.nii.gz/MD5E-s132518--e57ee5400596e064a72b06b0f7065ade.nii.gz

SWU_2/sub-0027178/ses-1/mri/anon_misub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/50/MD5E-s7906310--52dc94ad806e8d19afd58bc8c5a22623.nii.gz/MD5E-s7906310--52dc94ad806e8d19afd58bc8c5a22623.nii.gz

SWU_2/sub-0027178/ses-1/mri/anon_msub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/m9/MD5E-s7596883--2517812d63e883af94117e2063fbada6.nii.gz/MD5E-s7596883--2517812d63e883af94117e2063fbada6.nii.gz

SWU_2/sub-0027178/ses-1/mri/cat_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/Gj/MD5E-s97207--5bdb3132dce2a85352f09503f884caa4.nii.gz/MD5E-s97207--5bdb3132dce2a85352f09503f884caa4.nii.gz

SWU_2/sub-0027178/ses-1/mri/cobra_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027178/ses-1/mri/cobra_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/k6/MD5E-s47213--bd2fa97dcb4f6a3c65c8cd65c2f68d06.nii.gz/MD5E-s47213--bd2fa97dcb4f6a3c65c8cd65c2f68d06.nii.gz

SWU_2/sub-0027178/ses-1/mri/hammers_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027178/ses-1/mri/hammers_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/xV/MD5E-s143004--d004e07a26cd6105c7893141994ad2b0.nii.gz/MD5E-s143004--d004e07a26cd6105c7893141994ad2b0.nii.gz

SWU_2/sub-0027178/ses-1/mri/ibsr_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027178/ses-1/mri/ibsr_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/P8/MD5E-s152818--d7ed64f29a13680e58fc5ce189a78b51.nii.gz/MD5E-s152818--d7ed64f29a13680e58fc5ce189a78b51.nii.gz

SWU_2/sub-0027178/ses-1/mri/it_sub-0027178_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/K9/MD5E-s282--eb5cab24ea751bfac3325a78b16378a9.mat/MD5E-s282--eb5cab24ea751bfac3325a78b16378a9.mat

SWU_2/sub-0027178/ses-1/mri/it_sub-0027178_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/7j/MD5E-s282--9b3c747ac5e976cd1236e9d5dcc3359e.mat/MD5E-s282--9b3c747ac5e976cd1236e9d5dcc3359e.mat

SWU_2/sub-0027178/ses-1/mri/iy_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1p/gV/MD5E-s46014027--df8c0d8e4766b6c75649d6ea838e5301.nii.gz/MD5E-s46014027--df8c0d8e4766b6c75649d6ea838e5301.nii.gz

SWU_2/sub-0027178/ses-1/mri/julichbrain_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_2/sub-0027178/ses-1/mri/julichbrain_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/9k/MD5E-s194662--e9663e6489870aea5eeca16ed9540417.nii.gz/MD5E-s194662--e9663e6489870aea5eeca16ed9540417.nii.gz

SWU_2/sub-0027178/ses-1/mri/lpba40_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/lpba40_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/m0wp1sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/m0wp2sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/vv/MD5E-s2316715--a119f42419627a5bd6f6437fa3c27bd5.nii.gz/MD5E-s2316715--a119f42419627a5bd6f6437fa3c27bd5.nii.gz

SWU_2/sub-0027178/ses-1/mri/m0wp3sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/mori_sub-0027178_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/mori_sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/mwp1sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/mwp2sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/mwp3sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/neuromorphometrics_sub-0027178_ses-1_run-1_T1w.csv

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SWU_2/sub-0027178/ses-1/mri/neuromorphometrics_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/p0sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/p1sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/p2sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/p3sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/rp1sub-0027178_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027178/ses-1/mri/rp2sub-0027178_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027178/ses-1/mri/rp3sub-0027178_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027178/ses-1/mri/t_sub-0027178_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027178/ses-1/mri/t_sub-0027178_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/thalamus_sub-0027178_ses-1_run-1_T1w.csv

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SWU_2/sub-0027178/ses-1/mri/thalamus_sub-0027178_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027178/ses-1/mri/wj_sub-0027178_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027178/ses-1/mri/wmisub-0027178_ses-1_run-1_T1w.nii.gz

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