[DATALAD RUNCMD] Compute SWU_4/sub-0025752/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025752/ses-2/anat/sub-0025752_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025752/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025752/ses-2/label/catROI_sub-0025752_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/Q3/MD5E-s61322--1464a8e83c4983a7208d2a2dc21ac6fa.mat/MD5E-s61322--1464a8e83c4983a7208d2a2dc21ac6fa.mat

SWU_4/sub-0025752/ses-2/label/catROI_sub-0025752_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/2w/MD5E-s188896--7f49bc7c3af689a2afe6c811fd9965a9.xml/MD5E-s188896--7f49bc7c3af689a2afe6c811fd9965a9.xml

SWU_4/sub-0025752/ses-2/label/catROIs_sub-0025752_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/gF/MD5E-s120098--9a29ce40805e67b264a3cada35f71b4b.mat/MD5E-s120098--9a29ce40805e67b264a3cada35f71b4b.mat

SWU_4/sub-0025752/ses-2/label/catROIs_sub-0025752_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4V/Pg/MD5E-s332085--dba25e8b721a8518074ea8e7333840e1.xml/MD5E-s332085--dba25e8b721a8518074ea8e7333840e1.xml

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/zw/MD5E-s171518--e6ddd112ebbc65ba0c7876a24808d2f1.nii.gz/MD5E-s171518--e6ddd112ebbc65ba0c7876a24808d2f1.nii.gz

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/Kp/MD5E-s191396--11dcb1d16c62ce8fa931e4513a22f64c.nii.gz/MD5E-s191396--11dcb1d16c62ce8fa931e4513a22f64c.nii.gz

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/5P/MD5E-s259263--def32704cab0acd7080bac9744b52eb4.nii.gz/MD5E-s259263--def32704cab0acd7080bac9744b52eb4.nii.gz

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025752/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/6p/MD5E-s286684--8f314d5ef0e96d18e76b4470272d375a.nii.gz/MD5E-s286684--8f314d5ef0e96d18e76b4470272d375a.nii.gz

SWU_4/sub-0025752/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025752/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/gX/MD5E-s25142--c38c987cbe6460271b048e26914517bd.nii.gz/MD5E-s25142--c38c987cbe6460271b048e26914517bd.nii.gz

SWU_4/sub-0025752/ses-2/mri/aal3_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025752/ses-2/mri/aal3_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/7K/MD5E-s193940--d80f85e2c1175104d2d1a1c68eee5062.nii.gz/MD5E-s193940--d80f85e2c1175104d2d1a1c68eee5062.nii.gz

SWU_4/sub-0025752/ses-2/mri/anatomy3_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025752/ses-2/mri/anatomy3_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/Wk/MD5E-s140635--f12a5205a026bee0b4a90144a7002a74.nii.gz/MD5E-s140635--f12a5205a026bee0b4a90144a7002a74.nii.gz

SWU_4/sub-0025752/ses-2/mri/anon_misub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/Km/MD5E-s11829877--74a380e6fe15a28004d0ad344f71d1cb.nii.gz/MD5E-s11829877--74a380e6fe15a28004d0ad344f71d1cb.nii.gz

SWU_4/sub-0025752/ses-2/mri/anon_msub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/V2/MD5E-s12870408--71be3a2293c0f04c6f9288b02fd275fb.nii.gz/MD5E-s12870408--71be3a2293c0f04c6f9288b02fd275fb.nii.gz

SWU_4/sub-0025752/ses-2/mri/cat_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/FK/MD5E-s104677--d3e548cc836b6f465e3135d1327bb338.nii.gz/MD5E-s104677--d3e548cc836b6f465e3135d1327bb338.nii.gz

SWU_4/sub-0025752/ses-2/mri/cobra_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025752/ses-2/mri/cobra_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/MZ/MD5E-s49935--bff5e07db34663993ff0b9034ef9595c.nii.gz/MD5E-s49935--bff5e07db34663993ff0b9034ef9595c.nii.gz

SWU_4/sub-0025752/ses-2/mri/hammers_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025752/ses-2/mri/hammers_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/64/MD5E-s152844--047bdaab9c6a71203abdd7b9aab89dc4.nii.gz/MD5E-s152844--047bdaab9c6a71203abdd7b9aab89dc4.nii.gz

SWU_4/sub-0025752/ses-2/mri/ibsr_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025752/ses-2/mri/ibsr_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/0Z/MD5E-s161390--6f72a49fc10b8ad45c66c008ab8647e8.nii.gz/MD5E-s161390--6f72a49fc10b8ad45c66c008ab8647e8.nii.gz

SWU_4/sub-0025752/ses-2/mri/it_sub-0025752_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/Zf/MD5E-s282--6026d481848428a0a45c2eec9e598974.mat/MD5E-s282--6026d481848428a0a45c2eec9e598974.mat

SWU_4/sub-0025752/ses-2/mri/it_sub-0025752_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F3/XX/MD5E-s282--71ec076d5558f23e62101219af2f4610.mat/MD5E-s282--71ec076d5558f23e62101219af2f4610.mat

SWU_4/sub-0025752/ses-2/mri/iy_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/52/MD5E-s49029810--af09ab771eba332df62eba04c133f5fe.nii.gz/MD5E-s49029810--af09ab771eba332df62eba04c133f5fe.nii.gz

SWU_4/sub-0025752/ses-2/mri/julichbrain_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025752/ses-2/mri/julichbrain_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/k3/MD5E-s206010--c2fbc09df7d5e46d9e25b93e2358c6d4.nii.gz/MD5E-s206010--c2fbc09df7d5e46d9e25b93e2358c6d4.nii.gz

SWU_4/sub-0025752/ses-2/mri/lpba40_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025752/ses-2/mri/lpba40_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2V/k8/MD5E-s148969--1ad80273fd4f51c98b5f2647b6f4851e.nii.gz/MD5E-s148969--1ad80273fd4f51c98b5f2647b6f4851e.nii.gz

SWU_4/sub-0025752/ses-2/mri/m0wp1sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/Vz/MD5E-s2575310--b59013269c7b5375a323a993a35afc53.nii.gz/MD5E-s2575310--b59013269c7b5375a323a993a35afc53.nii.gz

SWU_4/sub-0025752/ses-2/mri/m0wp2sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/MW/MD5E-s2327309--8db11879b3928d86af61ad19c8bf2008.nii.gz/MD5E-s2327309--8db11879b3928d86af61ad19c8bf2008.nii.gz

SWU_4/sub-0025752/ses-2/mri/m0wp3sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xm/WZ/MD5E-s2517657--30349254e04a576847a2eb9fdbaea30a.nii.gz/MD5E-s2517657--30349254e04a576847a2eb9fdbaea30a.nii.gz

SWU_4/sub-0025752/ses-2/mri/mori_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025752/ses-2/mri/mori_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/wv/MD5E-s180518--9c415119858e79bd80b56f0d84f1a075.nii.gz/MD5E-s180518--9c415119858e79bd80b56f0d84f1a075.nii.gz

SWU_4/sub-0025752/ses-2/mri/mwp1sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/J5/MD5E-s2578045--e7887dfa6e49c8c6cfd0fe627cfecc7a.nii.gz/MD5E-s2578045--e7887dfa6e49c8c6cfd0fe627cfecc7a.nii.gz

SWU_4/sub-0025752/ses-2/mri/mwp2sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/8W/MD5E-s2323117--607c968f15af349d483e3399b6f0b856.nii.gz/MD5E-s2323117--607c968f15af349d483e3399b6f0b856.nii.gz

SWU_4/sub-0025752/ses-2/mri/mwp3sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025752/ses-2/mri/neuromorphometrics_sub-0025752_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025752/ses-2/mri/neuromorphometrics_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025752/ses-2/mri/p0sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/8q/MD5E-s673893--cc94034e4d43e9a0beabce744c7497ce.nii.gz/MD5E-s673893--cc94034e4d43e9a0beabce744c7497ce.nii.gz

SWU_4/sub-0025752/ses-2/mri/p1sub-0025752_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025752/ses-2/mri/p2sub-0025752_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/p3/X8/MD5E-s479512--d13f93433f68dd87d63af522eb5ea0fb.nii.gz/MD5E-s479512--d13f93433f68dd87d63af522eb5ea0fb.nii.gz

SWU_4/sub-0025752/ses-2/mri/p3sub-0025752_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025752/ses-2/mri/rp1sub-0025752_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025752/ses-2/mri/rp2sub-0025752_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025752/ses-2/mri/rp3sub-0025752_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025752/ses-2/mri/t_sub-0025752_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025752/ses-2/mri/t_sub-0025752_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PZ/GZ/MD5E-s283--be44a38e94d7769a0720e09b91d42b13.mat/MD5E-s283--be44a38e94d7769a0720e09b91d42b13.mat

SWU_4/sub-0025752/ses-2/mri/thalamus_sub-0025752_ses-2_run-1_T1w.csv

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SWU_4/sub-0025752/ses-2/mri/thalamus_sub-0025752_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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