[DATALAD RUNCMD] Compute SWU_4/sub-0025694/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025694/ses-1/anat/sub-0025694_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025694/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025694/ses-1/label/catROI_sub-0025694_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/Jv/MD5E-s58115--55a6a516054838fe9cd283ed7764f97a.mat/MD5E-s58115--55a6a516054838fe9cd283ed7764f97a.mat

SWU_4/sub-0025694/ses-1/label/catROI_sub-0025694_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/qW/MD5E-s188457--8e83afd2747c922a3c224f467ee72817.xml/MD5E-s188457--8e83afd2747c922a3c224f467ee72817.xml

SWU_4/sub-0025694/ses-1/label/catROIs_sub-0025694_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/M1/MD5E-s119958--9d7bad9f157442f481f8df751df4aa6f.mat/MD5E-s119958--9d7bad9f157442f481f8df751df4aa6f.mat

SWU_4/sub-0025694/ses-1/label/catROIs_sub-0025694_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/z2/MD5E-s332134--0debe1abe8ac939c4ff6b8a797b99d3a.xml/MD5E-s332134--0debe1abe8ac939c4ff6b8a797b99d3a.xml

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zv/pk/MD5E-s178215--857835bee0a2a3ed4bc2ab644d564e7c.nii.gz/MD5E-s178215--857835bee0a2a3ed4bc2ab644d564e7c.nii.gz

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x8/0x/MD5E-s199654--cc162b7b122c6a0273d8be8447e3ac85.nii.gz/MD5E-s199654--cc162b7b122c6a0273d8be8447e3ac85.nii.gz

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/31/MD5E-s268795--d345cafcd8878c4bf1c047bf363fed33.nii.gz/MD5E-s268795--d345cafcd8878c4bf1c047bf363fed33.nii.gz

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025694/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/Mv/MD5E-s298851--9a2fa366ac80021d4d331ff0491ccc2c.nii.gz/MD5E-s298851--9a2fa366ac80021d4d331ff0491ccc2c.nii.gz

SWU_4/sub-0025694/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025694/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/4m/MD5E-s24965--3c4f6d9921bdbe8cb6a5555f8ba889d1.nii.gz/MD5E-s24965--3c4f6d9921bdbe8cb6a5555f8ba889d1.nii.gz

SWU_4/sub-0025694/ses-1/mri/aal3_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025694/ses-1/mri/aal3_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/px/MD5E-s200002--dfa965802389f2240fd433660fd936ae.nii.gz/MD5E-s200002--dfa965802389f2240fd433660fd936ae.nii.gz

SWU_4/sub-0025694/ses-1/mri/anatomy3_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025694/ses-1/mri/anatomy3_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/XZ/MD5E-s146839--5ccebacd664558c25bd6decfca0cc842.nii.gz/MD5E-s146839--5ccebacd664558c25bd6decfca0cc842.nii.gz

SWU_4/sub-0025694/ses-1/mri/anon_misub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2J/j4/MD5E-s9153107--8299f4a6416a6b7fcf43b98adbb19090.nii.gz/MD5E-s9153107--8299f4a6416a6b7fcf43b98adbb19090.nii.gz

SWU_4/sub-0025694/ses-1/mri/anon_msub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/4v/MD5E-s8925532--5c2e75992c08732ee1b20a1832d6e8a7.nii.gz/MD5E-s8925532--5c2e75992c08732ee1b20a1832d6e8a7.nii.gz

SWU_4/sub-0025694/ses-1/mri/cat_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XK/mX/MD5E-s104904--1565c9154f01f2df690bac7a846df37a.nii.gz/MD5E-s104904--1565c9154f01f2df690bac7a846df37a.nii.gz

SWU_4/sub-0025694/ses-1/mri/cobra_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025694/ses-1/mri/cobra_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GQ/QF/MD5E-s51456--ae09e038716f1c78569f341433104542.nii.gz/MD5E-s51456--ae09e038716f1c78569f341433104542.nii.gz

SWU_4/sub-0025694/ses-1/mri/hammers_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025694/ses-1/mri/hammers_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GQ/zz/MD5E-s158964--369cc9d585b7fc4acfb23dc6aac40702.nii.gz/MD5E-s158964--369cc9d585b7fc4acfb23dc6aac40702.nii.gz

SWU_4/sub-0025694/ses-1/mri/ibsr_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025694/ses-1/mri/ibsr_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/fW/MD5E-s167354--07fa5511388b984de24915bec0be687c.nii.gz/MD5E-s167354--07fa5511388b984de24915bec0be687c.nii.gz

SWU_4/sub-0025694/ses-1/mri/it_sub-0025694_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/fM/MD5E-s283--71f628a1d00fddc22c1eefccc39a17a5.mat/MD5E-s283--71f628a1d00fddc22c1eefccc39a17a5.mat

SWU_4/sub-0025694/ses-1/mri/it_sub-0025694_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/Ww/MD5E-s281--9a63582e7a7aa3de879e8532658dab0d.mat/MD5E-s281--9a63582e7a7aa3de879e8532658dab0d.mat

SWU_4/sub-0025694/ses-1/mri/iy_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/p4/MD5E-s50518534--500036ee3a28e5604d625aba92f457f9.nii.gz/MD5E-s50518534--500036ee3a28e5604d625aba92f457f9.nii.gz

SWU_4/sub-0025694/ses-1/mri/julichbrain_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025694/ses-1/mri/julichbrain_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/gF/MD5E-s216496--93899c40aa085fe4d53fee9427253e15.nii.gz/MD5E-s216496--93899c40aa085fe4d53fee9427253e15.nii.gz

SWU_4/sub-0025694/ses-1/mri/lpba40_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025694/ses-1/mri/lpba40_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/0Q/MD5E-s154803--31584f0c7e3bac1233626ae7e1014017.nii.gz/MD5E-s154803--31584f0c7e3bac1233626ae7e1014017.nii.gz

SWU_4/sub-0025694/ses-1/mri/m0wp1sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/M7/MD5E-s2575254--8353758b24b7a25a7fd8697692bf419f.nii.gz/MD5E-s2575254--8353758b24b7a25a7fd8697692bf419f.nii.gz

SWU_4/sub-0025694/ses-1/mri/m0wp2sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/8M/MD5E-s2327790--2c3a967753a6d708e89cddea136da960.nii.gz/MD5E-s2327790--2c3a967753a6d708e89cddea136da960.nii.gz

SWU_4/sub-0025694/ses-1/mri/m0wp3sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/Fm/MD5E-s2517035--676034893e65800c5a5d78d79a1166cb.nii.gz/MD5E-s2517035--676034893e65800c5a5d78d79a1166cb.nii.gz

SWU_4/sub-0025694/ses-1/mri/mori_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025694/ses-1/mri/mori_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/wX/MD5E-s184223--c2bb6feb0aa9cf33920ec5846f12644c.nii.gz/MD5E-s184223--c2bb6feb0aa9cf33920ec5846f12644c.nii.gz

SWU_4/sub-0025694/ses-1/mri/mwp1sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/fV/MD5E-s2575028--238818e5e94a4adbac5d0a919a665123.nii.gz/MD5E-s2575028--238818e5e94a4adbac5d0a919a665123.nii.gz

SWU_4/sub-0025694/ses-1/mri/mwp2sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/P7/MD5E-s2322525--e80aaea7ae554eb9f9c99112678264bc.nii.gz/MD5E-s2322525--e80aaea7ae554eb9f9c99112678264bc.nii.gz

SWU_4/sub-0025694/ses-1/mri/mwp3sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/XW/MD5E-s2512482--cdc09b69483c7637229413fef6b56684.nii.gz/MD5E-s2512482--cdc09b69483c7637229413fef6b56684.nii.gz

SWU_4/sub-0025694/ses-1/mri/neuromorphometrics_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025694/ses-1/mri/neuromorphometrics_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/xG/MD5E-s217006--af4b104ab717c77b39a084795f27d7bc.nii.gz/MD5E-s217006--af4b104ab717c77b39a084795f27d7bc.nii.gz

SWU_4/sub-0025694/ses-1/mri/p0sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/GG/MD5E-s706238--6e384d42f1b2fb8c0904d7693fdb30ae.nii.gz/MD5E-s706238--6e384d42f1b2fb8c0904d7693fdb30ae.nii.gz

SWU_4/sub-0025694/ses-1/mri/p1sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/G4/MD5E-s752175--3ded52aae30febb16f2f13d3f6367260.nii.gz/MD5E-s752175--3ded52aae30febb16f2f13d3f6367260.nii.gz

SWU_4/sub-0025694/ses-1/mri/p2sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K8/1w/MD5E-s497508--e650453fcc4c3c6e245fd9cee3ead715.nii.gz/MD5E-s497508--e650453fcc4c3c6e245fd9cee3ead715.nii.gz

SWU_4/sub-0025694/ses-1/mri/p3sub-0025694_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025694/ses-1/mri/rp1sub-0025694_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025694/ses-1/mri/rp2sub-0025694_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025694/ses-1/mri/rp3sub-0025694_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025694/ses-1/mri/t_sub-0025694_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025694/ses-1/mri/t_sub-0025694_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/pg/MD5E-s284--7d47962c93b361342af3f63aa0e19ad4.mat/MD5E-s284--7d47962c93b361342af3f63aa0e19ad4.mat

SWU_4/sub-0025694/ses-1/mri/thalamus_sub-0025694_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025694/ses-1/mri/thalamus_sub-0025694_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/3q/MD5E-s16452--60963f4ebacaa3f1fe4c79c4bd91967d.nii.gz/MD5E-s16452--60963f4ebacaa3f1fe4c79c4bd91967d.nii.gz

SWU_4/sub-0025694/ses-1/mri/wj_sub-0025694_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025694/ses-1/surf/lh.area.sub-0025694_ses-1_run-1_T1w

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SWU_4/sub-0025694/ses-1/surf/lh.edgemap32k.sub-0025694_ses-1_run-1_T1w.mat

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