[DATALAD RUNCMD] Compute BMB_1/sub-0003010/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003010/ses-1/anat/sub-0003010_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003010/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003010/ses-1/label/catROI_sub-0003010_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g4/V3/MD5E-s57867--53fa735416b679fed4ade830adf00a5d.mat/MD5E-s57867--53fa735416b679fed4ade830adf00a5d.mat

BMB_1/sub-0003010/ses-1/label/catROI_sub-0003010_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/0F/MD5E-s189036--7f70b8bc3d3c726def568c55ee25404d.xml/MD5E-s189036--7f70b8bc3d3c726def568c55ee25404d.xml

BMB_1/sub-0003010/ses-1/label/catROIs_sub-0003010_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/Wk/MD5E-s119959--5611a1f797ebd627321b62e8fca60fc7.mat/MD5E-s119959--5611a1f797ebd627321b62e8fca60fc7.mat

BMB_1/sub-0003010/ses-1/label/catROIs_sub-0003010_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/F4/MD5E-s332153--aadf740ee56a7b8d4143c4a236c9f220.xml/MD5E-s332153--aadf740ee56a7b8d4143c4a236c9f220.xml

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/WW/MD5E-s153161--b80f9738dbaa1b3ad7d3acb3f42ab19f.nii.gz/MD5E-s153161--b80f9738dbaa1b3ad7d3acb3f42ab19f.nii.gz

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/4G/MD5E-s171165--379e2572b92702e62b4734c75c8f1d87.nii.gz/MD5E-s171165--379e2572b92702e62b4734c75c8f1d87.nii.gz

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xg/9G/MD5E-s232993--016c4257367eacf5e5ce3415c15a3488.nii.gz/MD5E-s232993--016c4257367eacf5e5ce3415c15a3488.nii.gz

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003010/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m7/w8/MD5E-s258064--6730f4f3d9a2b73f6c84a357394387bd.nii.gz/MD5E-s258064--6730f4f3d9a2b73f6c84a357394387bd.nii.gz

BMB_1/sub-0003010/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003010/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/Mz/MD5E-s23301--1ed8e700d0ed0c7613dfe36c94249c2c.nii.gz/MD5E-s23301--1ed8e700d0ed0c7613dfe36c94249c2c.nii.gz

BMB_1/sub-0003010/ses-1/mri/aal3_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003010/ses-1/mri/aal3_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/52/MD5E-s172266--9e713bacd24831753c59f497a2ea89a3.nii.gz/MD5E-s172266--9e713bacd24831753c59f497a2ea89a3.nii.gz

BMB_1/sub-0003010/ses-1/mri/anatomy3_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003010/ses-1/mri/anatomy3_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/Gk/MD5E-s126199--373fc8431290f07f3dc163bb8c2e80c5.nii.gz/MD5E-s126199--373fc8431290f07f3dc163bb8c2e80c5.nii.gz

BMB_1/sub-0003010/ses-1/mri/anon_misub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7q/qg/MD5E-s5208110--19d417c2b8f55f6b5ee9eb2d8a0e5a18.nii.gz/MD5E-s5208110--19d417c2b8f55f6b5ee9eb2d8a0e5a18.nii.gz

BMB_1/sub-0003010/ses-1/mri/anon_msub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/9V/MD5E-s11874141--a91c65b1e434919ab676a282a9a89b54.nii.gz/MD5E-s11874141--a91c65b1e434919ab676a282a9a89b54.nii.gz

BMB_1/sub-0003010/ses-1/mri/cat_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/z8/MD5E-s92270--d87f46689af4296e389f142bd004725f.nii.gz/MD5E-s92270--d87f46689af4296e389f142bd004725f.nii.gz

BMB_1/sub-0003010/ses-1/mri/cobra_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003010/ses-1/mri/cobra_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/Q6/MD5E-s45590--3baa0bbe9c65148e45bc2a77ea896629.nii.gz/MD5E-s45590--3baa0bbe9c65148e45bc2a77ea896629.nii.gz

BMB_1/sub-0003010/ses-1/mri/hammers_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003010/ses-1/mri/hammers_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/KW/MD5E-s136164--639df06f68d51aa07e12d4698acf07ed.nii.gz/MD5E-s136164--639df06f68d51aa07e12d4698acf07ed.nii.gz

BMB_1/sub-0003010/ses-1/mri/ibsr_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003010/ses-1/mri/ibsr_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/Gk/MD5E-s144129--513cedc36886a5da52fa95e34ba1cdf6.nii.gz/MD5E-s144129--513cedc36886a5da52fa95e34ba1cdf6.nii.gz

BMB_1/sub-0003010/ses-1/mri/it_sub-0003010_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/k2/MD5E-s285--92be9f60b7d858e29b43615337c61122.mat/MD5E-s285--92be9f60b7d858e29b43615337c61122.mat

BMB_1/sub-0003010/ses-1/mri/it_sub-0003010_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/0F/MD5E-s284--355ab71598ee85f7e1c84ce8fd008f2f.mat/MD5E-s284--355ab71598ee85f7e1c84ce8fd008f2f.mat

BMB_1/sub-0003010/ses-1/mri/iy_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/1J/MD5E-s40472293--4147ce66aeac252588ccb73b6287d1e1.nii.gz/MD5E-s40472293--4147ce66aeac252588ccb73b6287d1e1.nii.gz

BMB_1/sub-0003010/ses-1/mri/julichbrain_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003010/ses-1/mri/julichbrain_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/Vf/MD5E-s183295--9aae078be20b10818ceb9abdeb0729af.nii.gz/MD5E-s183295--9aae078be20b10818ceb9abdeb0729af.nii.gz

BMB_1/sub-0003010/ses-1/mri/lpba40_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003010/ses-1/mri/lpba40_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/8V/MD5E-s133946--75c5b96e059af7c33e3700d5ca416e7b.nii.gz/MD5E-s133946--75c5b96e059af7c33e3700d5ca416e7b.nii.gz

BMB_1/sub-0003010/ses-1/mri/m0wp1sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/6k/MD5E-s2585677--ddadb6f7f2b9b893e28f1efd3d9e71b7.nii.gz/MD5E-s2585677--ddadb6f7f2b9b893e28f1efd3d9e71b7.nii.gz

BMB_1/sub-0003010/ses-1/mri/m0wp2sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/MP/MD5E-s2296129--80fa3c448393f75eee14380f39114f65.nii.gz/MD5E-s2296129--80fa3c448393f75eee14380f39114f65.nii.gz

BMB_1/sub-0003010/ses-1/mri/m0wp3sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G2/Q8/MD5E-s2507052--cbc09f19b68c68535c16a2d6e04f25fe.nii.gz/MD5E-s2507052--cbc09f19b68c68535c16a2d6e04f25fe.nii.gz

BMB_1/sub-0003010/ses-1/mri/mori_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003010/ses-1/mri/mori_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/Z7/MD5E-s158712--6b2800495e68b244fdbe4990c9ad5fdf.nii.gz/MD5E-s158712--6b2800495e68b244fdbe4990c9ad5fdf.nii.gz

BMB_1/sub-0003010/ses-1/mri/mwp1sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GQ/Xp/MD5E-s2595611--360fb3cb4be0f929992e47eb0bdf97c5.nii.gz/MD5E-s2595611--360fb3cb4be0f929992e47eb0bdf97c5.nii.gz

BMB_1/sub-0003010/ses-1/mri/mwp2sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/5q/MD5E-s2302555--3960ca2ef5ae72c0e554d080d84f58a7.nii.gz/MD5E-s2302555--3960ca2ef5ae72c0e554d080d84f58a7.nii.gz

BMB_1/sub-0003010/ses-1/mri/mwp3sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/6P/MD5E-s2503357--ff49a47ca4b445799fdddc52af8e5cf5.nii.gz/MD5E-s2503357--ff49a47ca4b445799fdddc52af8e5cf5.nii.gz

BMB_1/sub-0003010/ses-1/mri/neuromorphometrics_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003010/ses-1/mri/neuromorphometrics_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/jP/MD5E-s185716--ed24193996ad36b116dd9586428dda8f.nii.gz/MD5E-s185716--ed24193996ad36b116dd9586428dda8f.nii.gz

BMB_1/sub-0003010/ses-1/mri/p0sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/1F/MD5E-s564497--8f3032959430ceaff342ede7deeed326.nii.gz/MD5E-s564497--8f3032959430ceaff342ede7deeed326.nii.gz

BMB_1/sub-0003010/ses-1/mri/p1sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/ZK/MD5E-s598388--ab645995e83c17b01d58e4a244002739.nii.gz/MD5E-s598388--ab645995e83c17b01d58e4a244002739.nii.gz

BMB_1/sub-0003010/ses-1/mri/p2sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/2w/MD5E-s392806--34019109f61ff85e7a1665ef87e94ae3.nii.gz/MD5E-s392806--34019109f61ff85e7a1665ef87e94ae3.nii.gz

BMB_1/sub-0003010/ses-1/mri/p3sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/9V/MD5E-s339582--7e8c6465e0a5a37bc35f58c546140b34.nii.gz/MD5E-s339582--7e8c6465e0a5a37bc35f58c546140b34.nii.gz

BMB_1/sub-0003010/ses-1/mri/rp1sub-0003010_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/kQ/MD5E-s453004--942843a659c245289c00a2902872ef80.nii.gz/MD5E-s453004--942843a659c245289c00a2902872ef80.nii.gz

BMB_1/sub-0003010/ses-1/mri/rp2sub-0003010_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/0x/MD5E-s308581--c1c1434d669fa5c369523dda073674c1.nii.gz/MD5E-s308581--c1c1434d669fa5c369523dda073674c1.nii.gz

BMB_1/sub-0003010/ses-1/mri/rp3sub-0003010_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/jv/MD5E-s282085--ded4c7fce28305ef26b7cef7714bdfc4.nii.gz/MD5E-s282085--ded4c7fce28305ef26b7cef7714bdfc4.nii.gz

BMB_1/sub-0003010/ses-1/mri/t_sub-0003010_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/VF/MD5E-s282--77fef988b111bd33a0e4c072086e0e7f.mat/MD5E-s282--77fef988b111bd33a0e4c072086e0e7f.mat

BMB_1/sub-0003010/ses-1/mri/t_sub-0003010_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/7P/MD5E-s283--61961091c5ec5084d48558095b8a5b7a.mat/MD5E-s283--61961091c5ec5084d48558095b8a5b7a.mat

BMB_1/sub-0003010/ses-1/mri/thalamus_sub-0003010_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003010/ses-1/mri/thalamus_sub-0003010_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/Gj/MD5E-s15772--b6e9ae0ccdff92aa33d5355d704d773c.nii.gz/MD5E-s15772--b6e9ae0ccdff92aa33d5355d704d773c.nii.gz

BMB_1/sub-0003010/ses-1/mri/wj_sub-0003010_ses-1_run-1_T1w.nii.gz

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