[DATALAD RUNCMD] Compute BNU_2/sub-0025948/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025948/ses-2/anat/sub-0025948_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025948/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025948/ses-2/label/catROI_sub-0025948_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/Vm/MD5E-s61286--7f310d9e1abdcc6a2649dfbbab803085.mat/MD5E-s61286--7f310d9e1abdcc6a2649dfbbab803085.mat

BNU_2/sub-0025948/ses-2/label/catROI_sub-0025948_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/Qj/MD5E-s189083--e5456fe321e087728a644b041e878616.xml/MD5E-s189083--e5456fe321e087728a644b041e878616.xml

BNU_2/sub-0025948/ses-2/label/catROIs_sub-0025948_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/Q8/MD5E-s120010--abcccabf477a89200a5bf3335d5ae958.mat/MD5E-s120010--abcccabf477a89200a5bf3335d5ae958.mat

BNU_2/sub-0025948/ses-2/label/catROIs_sub-0025948_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/jk/MD5E-s332160--704cb7ad49aa61aa97d29869b3f051f4.xml/MD5E-s332160--704cb7ad49aa61aa97d29869b3f051f4.xml

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/G4/MD5E-s157628--f581b0366003bc425880580cb55da504.nii.gz/MD5E-s157628--f581b0366003bc425880580cb55da504.nii.gz

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/67/MD5E-s176976--ce9130372e5a94f06f9ac089100e4945.nii.gz/MD5E-s176976--ce9130372e5a94f06f9ac089100e4945.nii.gz

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/6k/MD5E-s237728--c9d61a7fa3704f4713db6d1815b4a2cb.nii.gz/MD5E-s237728--c9d61a7fa3704f4713db6d1815b4a2cb.nii.gz

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025948/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/mw/MD5E-s265147--4b68513d53e5936aa9d62b7135ee8526.nii.gz/MD5E-s265147--4b68513d53e5936aa9d62b7135ee8526.nii.gz

BNU_2/sub-0025948/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025948/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/p3/MD5E-s23833--d83715c61415c06cbb585759a001dff9.nii.gz/MD5E-s23833--d83715c61415c06cbb585759a001dff9.nii.gz

BNU_2/sub-0025948/ses-2/mri/aal3_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025948/ses-2/mri/aal3_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/XG/MD5E-s179421--a487c426cbccc0097f130e648a65ffb1.nii.gz/MD5E-s179421--a487c426cbccc0097f130e648a65ffb1.nii.gz

BNU_2/sub-0025948/ses-2/mri/anatomy3_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025948/ses-2/mri/anatomy3_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/j2/MD5E-s129317--85a686ad73d8b7b0060a13e4dfad6be7.nii.gz/MD5E-s129317--85a686ad73d8b7b0060a13e4dfad6be7.nii.gz

BNU_2/sub-0025948/ses-2/mri/anon_misub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/89/Wf/MD5E-s4598616--c4118142d128aee924760587584f3e34.nii.gz/MD5E-s4598616--c4118142d128aee924760587584f3e34.nii.gz

BNU_2/sub-0025948/ses-2/mri/anon_msub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/kf/MD5E-s10598111--13825637fdf5c43592abbd721393d9f7.nii.gz/MD5E-s10598111--13825637fdf5c43592abbd721393d9f7.nii.gz

BNU_2/sub-0025948/ses-2/mri/cat_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/fw/MD5E-s95561--da41bac8e4bad728d84af8d7d02486ef.nii.gz/MD5E-s95561--da41bac8e4bad728d84af8d7d02486ef.nii.gz

BNU_2/sub-0025948/ses-2/mri/cobra_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025948/ses-2/mri/cobra_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/Pz/MD5E-s47592--8a96958b0bd45ede227fd033ffe5536a.nii.gz/MD5E-s47592--8a96958b0bd45ede227fd033ffe5536a.nii.gz

BNU_2/sub-0025948/ses-2/mri/hammers_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025948/ses-2/mri/hammers_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/1x/MD5E-s140801--351ad543259cce2880ceb25732b44bab.nii.gz/MD5E-s140801--351ad543259cce2880ceb25732b44bab.nii.gz

BNU_2/sub-0025948/ses-2/mri/ibsr_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025948/ses-2/mri/ibsr_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/g8/MD5E-s150615--e99024b0616aeb96cc51754a0f2a68f2.nii.gz/MD5E-s150615--e99024b0616aeb96cc51754a0f2a68f2.nii.gz

BNU_2/sub-0025948/ses-2/mri/it_sub-0025948_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/x8/MD5E-s283--338d6137520634869c98990269d20dc9.mat/MD5E-s283--338d6137520634869c98990269d20dc9.mat

BNU_2/sub-0025948/ses-2/mri/it_sub-0025948_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/qx/MD5E-s284--9798a8bd3f25b9a1effc2629e72fcf25.mat/MD5E-s284--9798a8bd3f25b9a1effc2629e72fcf25.mat

BNU_2/sub-0025948/ses-2/mri/iy_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4V/Zx/MD5E-s44806410--251105c614d4327e1c12ac9e6f364f8c.nii.gz/MD5E-s44806410--251105c614d4327e1c12ac9e6f364f8c.nii.gz

BNU_2/sub-0025948/ses-2/mri/julichbrain_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025948/ses-2/mri/julichbrain_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/qk/MD5E-s189149--a462e58bd4386cdeec96f503e97bfd46.nii.gz/MD5E-s189149--a462e58bd4386cdeec96f503e97bfd46.nii.gz

BNU_2/sub-0025948/ses-2/mri/lpba40_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025948/ses-2/mri/lpba40_sub-0025948_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/p2/VW/MD5E-s138787--3fcbdb16511b883ef1bade0ef234a28b.nii.gz/MD5E-s138787--3fcbdb16511b883ef1bade0ef234a28b.nii.gz

BNU_2/sub-0025948/ses-2/mri/m0wp1sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025948/ses-2/mri/m0wp2sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/9k/MD5E-s2299879--0736ccab0516955b0b6c761393b70cc6.nii.gz/MD5E-s2299879--0736ccab0516955b0b6c761393b70cc6.nii.gz

BNU_2/sub-0025948/ses-2/mri/m0wp3sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/V3/MD5E-s2520654--8a60aec16bb4101d019ec2f562c78f86.nii.gz/MD5E-s2520654--8a60aec16bb4101d019ec2f562c78f86.nii.gz

BNU_2/sub-0025948/ses-2/mri/mori_sub-0025948_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025948/ses-2/mri/mori_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/X0/MD5E-s165371--b8f5c830a194bef4bff4a0a03b532cff.nii.gz/MD5E-s165371--b8f5c830a194bef4bff4a0a03b532cff.nii.gz

BNU_2/sub-0025948/ses-2/mri/mwp1sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025948/ses-2/mri/mwp2sub-0025948_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025948/ses-2/mri/mwp3sub-0025948_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025948/ses-2/mri/neuromorphometrics_sub-0025948_ses-2_run-1_T1w.csv

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BNU_2/sub-0025948/ses-2/mri/neuromorphometrics_sub-0025948_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025948/ses-2/mri/p0sub-0025948_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025948/ses-2/mri/p1sub-0025948_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025948/ses-2/mri/p2sub-0025948_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025948/ses-2/mri/p3sub-0025948_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025948/ses-2/mri/rp1sub-0025948_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025948/ses-2/mri/rp2sub-0025948_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025948/ses-2/mri/rp3sub-0025948_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025948/ses-2/mri/t_sub-0025948_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025948/ses-2/mri/t_sub-0025948_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025948/ses-2/mri/thalamus_sub-0025948_ses-2_run-1_T1w.csv

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BNU_2/sub-0025948/ses-2/mri/thalamus_sub-0025948_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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