[DATALAD RUNCMD] Compute BNU_1/sub-0025905/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025905/ses-1/anat/sub-0025905_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025905/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025905/ses-1/label/catROI_sub-0025905_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/3p/MD5E-s61212--269d252a3321143d98f982999ca60e70.mat/MD5E-s61212--269d252a3321143d98f982999ca60e70.mat

BNU_1/sub-0025905/ses-1/label/catROI_sub-0025905_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/9W/MD5E-s188718--c59fdfbfc9797625fca846a58f8708d4.xml/MD5E-s188718--c59fdfbfc9797625fca846a58f8708d4.xml

BNU_1/sub-0025905/ses-1/label/catROIs_sub-0025905_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/W7/MD5E-s119896--a949c0199d73efd82b1993e2ba1f5223.mat/MD5E-s119896--a949c0199d73efd82b1993e2ba1f5223.mat

BNU_1/sub-0025905/ses-1/label/catROIs_sub-0025905_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/g7/MD5E-s332120--c9eb969d1afd159c1cf2f6295e4bfe50.xml/MD5E-s332120--c9eb969d1afd159c1cf2f6295e4bfe50.xml

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qz/X2/MD5E-s148891--c7bf58047ef09f948195447c7a0b79de.nii.gz/MD5E-s148891--c7bf58047ef09f948195447c7a0b79de.nii.gz

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/FM/MD5E-s168506--e5e9796fcfc1d5f4d17c80f5836326fe.nii.gz/MD5E-s168506--e5e9796fcfc1d5f4d17c80f5836326fe.nii.gz

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/00/MD5E-s225571--cbbaed0ca1ecb631d5a3e9616bcc6747.nii.gz/MD5E-s225571--cbbaed0ca1ecb631d5a3e9616bcc6747.nii.gz

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025905/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/jW/MD5E-s251771--b0832a2eba762c050a706fc5b2bda292.nii.gz/MD5E-s251771--b0832a2eba762c050a706fc5b2bda292.nii.gz

BNU_1/sub-0025905/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025905/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m8/04/MD5E-s20678--cd91aa7c68120fe25e169d59833a6d20.nii.gz/MD5E-s20678--cd91aa7c68120fe25e169d59833a6d20.nii.gz

BNU_1/sub-0025905/ses-1/mri/aal3_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025905/ses-1/mri/aal3_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/P9/MD5E-s170238--b7600421e9f5d21eadcd29b207d21db5.nii.gz/MD5E-s170238--b7600421e9f5d21eadcd29b207d21db5.nii.gz

BNU_1/sub-0025905/ses-1/mri/anatomy3_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025905/ses-1/mri/anatomy3_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/4z/MD5E-s119085--7ac2210e04f1dceaa662e092f03331ef.nii.gz/MD5E-s119085--7ac2210e04f1dceaa662e092f03331ef.nii.gz

BNU_1/sub-0025905/ses-1/mri/anon_misub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/Kv/MD5E-s4143404--f79e57286faf84a6242451832a4c5607.nii.gz/MD5E-s4143404--f79e57286faf84a6242451832a4c5607.nii.gz

BNU_1/sub-0025905/ses-1/mri/anon_msub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/0m/MD5E-s10278365--b74800a9e93ef2ce1645e49617171266.nii.gz/MD5E-s10278365--b74800a9e93ef2ce1645e49617171266.nii.gz

BNU_1/sub-0025905/ses-1/mri/cat_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zj/JX/MD5E-s91020--347b41b90bb5a073634c1ec777643ff3.nii.gz/MD5E-s91020--347b41b90bb5a073634c1ec777643ff3.nii.gz

BNU_1/sub-0025905/ses-1/mri/cobra_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025905/ses-1/mri/cobra_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/3z/MD5E-s41853--87b799c5c903db2ac64eb795f40ca361.nii.gz/MD5E-s41853--87b799c5c903db2ac64eb795f40ca361.nii.gz

BNU_1/sub-0025905/ses-1/mri/hammers_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025905/ses-1/mri/hammers_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/gG/MD5E-s134060--164604bea3a9c2914bf2fe2afb64399d.nii.gz/MD5E-s134060--164604bea3a9c2914bf2fe2afb64399d.nii.gz

BNU_1/sub-0025905/ses-1/mri/ibsr_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025905/ses-1/mri/ibsr_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/MZ/MD5E-s141402--ea7d2b201bba7edb3bc1f8ff5c88ff1e.nii.gz/MD5E-s141402--ea7d2b201bba7edb3bc1f8ff5c88ff1e.nii.gz

BNU_1/sub-0025905/ses-1/mri/it_sub-0025905_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/ff/MD5E-s283--ee0d4015be058226828b66231ddea33f.mat/MD5E-s283--ee0d4015be058226828b66231ddea33f.mat

BNU_1/sub-0025905/ses-1/mri/it_sub-0025905_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/qj/MD5E-s283--432e623e3e5ceb807ac7d3219aec67f9.mat/MD5E-s283--432e623e3e5ceb807ac7d3219aec67f9.mat

BNU_1/sub-0025905/ses-1/mri/iy_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/zW/MD5E-s36047799--bbfaa28a4050e79eae4a94b8cf245c78.nii.gz/MD5E-s36047799--bbfaa28a4050e79eae4a94b8cf245c78.nii.gz

BNU_1/sub-0025905/ses-1/mri/julichbrain_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025905/ses-1/mri/julichbrain_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wf/qW/MD5E-s180224--2a340efcc23a0161ea629e354915abf6.nii.gz/MD5E-s180224--2a340efcc23a0161ea629e354915abf6.nii.gz

BNU_1/sub-0025905/ses-1/mri/lpba40_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025905/ses-1/mri/lpba40_sub-0025905_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/WM/91/MD5E-s132037--c909c460b655b2c1f2f4e226aa83d93c.nii.gz/MD5E-s132037--c909c460b655b2c1f2f4e226aa83d93c.nii.gz

BNU_1/sub-0025905/ses-1/mri/m0wp1sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/f6/MD5E-s2574788--f8009e0d6a368cf22a4e9335cea393ad.nii.gz/MD5E-s2574788--f8009e0d6a368cf22a4e9335cea393ad.nii.gz

BNU_1/sub-0025905/ses-1/mri/m0wp2sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/36/MD5E-s2289672--933adb21b51eedd5d666d22791a2c94a.nii.gz/MD5E-s2289672--933adb21b51eedd5d666d22791a2c94a.nii.gz

BNU_1/sub-0025905/ses-1/mri/m0wp3sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/23/p0/MD5E-s2485082--c3d076974af4d5429059bf47c984fa2e.nii.gz/MD5E-s2485082--c3d076974af4d5429059bf47c984fa2e.nii.gz

BNU_1/sub-0025905/ses-1/mri/mori_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025905/ses-1/mri/mori_sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/Zg/MD5E-s156237--3cdcc728a4e510b3fc7a0ad76ea8500a.nii.gz/MD5E-s156237--3cdcc728a4e510b3fc7a0ad76ea8500a.nii.gz

BNU_1/sub-0025905/ses-1/mri/mwp1sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/Kz/MD5E-s2576896--2b5ed4d30831b744a37f625a9dfad680.nii.gz/MD5E-s2576896--2b5ed4d30831b744a37f625a9dfad680.nii.gz

BNU_1/sub-0025905/ses-1/mri/mwp2sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6G/M7/MD5E-s2284966--c033bde0b05a1a7563aa2d25562de154.nii.gz/MD5E-s2284966--c033bde0b05a1a7563aa2d25562de154.nii.gz

BNU_1/sub-0025905/ses-1/mri/mwp3sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025905/ses-1/mri/neuromorphometrics_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025905/ses-1/mri/neuromorphometrics_sub-0025905_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025905/ses-1/mri/p0sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/G4/MD5E-s762744--e97a29f634f4a2857c6c10faf5a92a3f.nii.gz/MD5E-s762744--e97a29f634f4a2857c6c10faf5a92a3f.nii.gz

BNU_1/sub-0025905/ses-1/mri/p1sub-0025905_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/36/MD5E-s771912--862122f064928706711fc5417b9ac882.nii.gz/MD5E-s771912--862122f064928706711fc5417b9ac882.nii.gz

BNU_1/sub-0025905/ses-1/mri/p2sub-0025905_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025905/ses-1/mri/p3sub-0025905_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025905/ses-1/mri/rp1sub-0025905_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025905/ses-1/mri/rp2sub-0025905_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025905/ses-1/mri/rp3sub-0025905_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025905/ses-1/mri/t_sub-0025905_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K7/X0/MD5E-s284--069efa6fa9603ae0a92f169dc6a592aa.mat/MD5E-s284--069efa6fa9603ae0a92f169dc6a592aa.mat

BNU_1/sub-0025905/ses-1/mri/t_sub-0025905_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025905/ses-1/mri/thalamus_sub-0025905_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025905/ses-1/mri/thalamus_sub-0025905_ses-1_run-1_T1w.nii.gz

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