[DATALAD RUNCMD] Compute MRN/sub-0027416/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027416/ses-2/anat/sub-0027416_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027416/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027416/ses-2/label/catROI_sub-0027416_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/z3/MD5E-s61151--b257cfef93aff057cde7ad5986099cd3.mat/MD5E-s61151--b257cfef93aff057cde7ad5986099cd3.mat

MRN/sub-0027416/ses-2/label/catROI_sub-0027416_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/kG/MD5E-s188877--7a4cf38e3b8c67d35a4009cc899444b1.xml/MD5E-s188877--7a4cf38e3b8c67d35a4009cc899444b1.xml

MRN/sub-0027416/ses-2/label/catROIs_sub-0027416_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/kq/MD5E-s120112--c62d1f1b99d174bef591ed87979c729b.mat/MD5E-s120112--c62d1f1b99d174bef591ed87979c729b.mat

MRN/sub-0027416/ses-2/label/catROIs_sub-0027416_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/mZ/MD5E-s332221--eb8a16960dc179503e311c2b5db888c6.xml/MD5E-s332221--eb8a16960dc179503e311c2b5db888c6.xml

MRN/sub-0027416/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027416/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/5W/MD5E-s163176--5998df1bf01847e65a0fc44eb924be47.nii.gz/MD5E-s163176--5998df1bf01847e65a0fc44eb924be47.nii.gz

MRN/sub-0027416/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027416/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/FK/MD5E-s182112--aafc77a48b17664ea5e1bcf7baf993db.nii.gz/MD5E-s182112--aafc77a48b17664ea5e1bcf7baf993db.nii.gz

MRN/sub-0027416/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027416/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/G2/MD5E-s243446--d08c57fbb8020d9476fd839e310dd4d2.nii.gz/MD5E-s243446--d08c57fbb8020d9476fd839e310dd4d2.nii.gz

MRN/sub-0027416/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027416/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/2W/MD5E-s270078--6176972721b354ff972ca3b9c7df3103.nii.gz/MD5E-s270078--6176972721b354ff972ca3b9c7df3103.nii.gz

MRN/sub-0027416/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027416/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/K6/MD5E-s25442--b4337dd68040fc3048b6bf513cabe55d.nii.gz/MD5E-s25442--b4337dd68040fc3048b6bf513cabe55d.nii.gz

MRN/sub-0027416/ses-2/mri/aal3_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027416/ses-2/mri/aal3_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/5M/MD5E-s184982--e2de5893945eddd157ebf035fa5a235b.nii.gz/MD5E-s184982--e2de5893945eddd157ebf035fa5a235b.nii.gz

MRN/sub-0027416/ses-2/mri/anatomy3_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027416/ses-2/mri/anatomy3_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/53/MD5E-s133129--3d837dea9022e87a907633cd995ace1a.nii.gz/MD5E-s133129--3d837dea9022e87a907633cd995ace1a.nii.gz

MRN/sub-0027416/ses-2/mri/anon_misub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/7W/MD5E-s9209097--0039e52bf6d8883c6be2e950a2705ca3.nii.gz/MD5E-s9209097--0039e52bf6d8883c6be2e950a2705ca3.nii.gz

MRN/sub-0027416/ses-2/mri/anon_msub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/Wv/MD5E-s10258909--a6c6ed7657d8f24bbdf8dd2c6a6ddc51.nii.gz/MD5E-s10258909--a6c6ed7657d8f24bbdf8dd2c6a6ddc51.nii.gz

MRN/sub-0027416/ses-2/mri/cat_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZM/VZ/MD5E-s97581--3e5138e8cc17955ac96e09862daf2b04.nii.gz/MD5E-s97581--3e5138e8cc17955ac96e09862daf2b04.nii.gz

MRN/sub-0027416/ses-2/mri/cobra_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027416/ses-2/mri/cobra_sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/hammers_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027416/ses-2/mri/hammers_sub-0027416_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/6v/k2/MD5E-s143172--5814a5865174c3b4b86ee2bbc919b13c.nii.gz/MD5E-s143172--5814a5865174c3b4b86ee2bbc919b13c.nii.gz

MRN/sub-0027416/ses-2/mri/ibsr_sub-0027416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027416/ses-2/mri/ibsr_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027416/ses-2/mri/it_sub-0027416_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/Jp/MD5E-s282--c1b3c35e489b003c17b48a429967ae28.mat/MD5E-s282--c1b3c35e489b003c17b48a429967ae28.mat

MRN/sub-0027416/ses-2/mri/it_sub-0027416_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/Fw/MD5E-s284--50b0faed70920db3daf36f40be734d55.mat/MD5E-s284--50b0faed70920db3daf36f40be734d55.mat

MRN/sub-0027416/ses-2/mri/iy_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/m9/MD5E-s43990223--533cc4b247223044424eef6965c854b5.nii.gz/MD5E-s43990223--533cc4b247223044424eef6965c854b5.nii.gz

MRN/sub-0027416/ses-2/mri/julichbrain_sub-0027416_ses-2_run-1_T1w.csv

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MRN/sub-0027416/ses-2/mri/julichbrain_sub-0027416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xM/w9/MD5E-s192559--7b018420dd1b0c649c5de2ccab055a13.nii.gz/MD5E-s192559--7b018420dd1b0c649c5de2ccab055a13.nii.gz

MRN/sub-0027416/ses-2/mri/lpba40_sub-0027416_ses-2_run-1_T1w.csv

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MRN/sub-0027416/ses-2/mri/lpba40_sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/m0wp1sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/m0wp2sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/m0wp3sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/mori_sub-0027416_ses-2_run-1_T1w.csv

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MRN/sub-0027416/ses-2/mri/mori_sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/mwp1sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/mwp2sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/mwp3sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/neuromorphometrics_sub-0027416_ses-2_run-1_T1w.csv

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MRN/sub-0027416/ses-2/mri/neuromorphometrics_sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/p0sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/p1sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/p2sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/p3sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/rp1sub-0027416_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027416/ses-2/mri/rp2sub-0027416_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027416/ses-2/mri/rp3sub-0027416_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027416/ses-2/mri/t_sub-0027416_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027416/ses-2/mri/t_sub-0027416_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027416/ses-2/mri/thalamus_sub-0027416_ses-2_run-1_T1w.csv

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MRN/sub-0027416/ses-2/mri/thalamus_sub-0027416_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027416/ses-2/mri/wj_sub-0027416_ses-2_run-1_T1w.nii.gz

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